Detailed information NTG0749119

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OHJ31_RS09800
• Genome accession: NZ_CP109769
• Coordinates: 2196730..2197575 (+)
• Length: 281 a.a.
• NCBI ID: WP_205947788.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain B2-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2191730..2202575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHJ31_RS09770 (OHJ31_09740)	gspI	2192123..2192488 (+)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-
OHJ31_RS09775 (OHJ31_09745)	gspJ	2192488..2193138 (+)	651	WP_015841043.1	type II secretion system minor pseudopilin GspJ	-
OHJ31_RS09780 (OHJ31_09750)	gspK	2193135..2194121 (+)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
OHJ31_RS09785 (OHJ31_09755)	gspL	2194118..2195395 (+)	1278	WP_350327576.1	type II secretion system protein GspL	-
OHJ31_RS09790 (OHJ31_09760)	-	2195392..2195886 (+)	495	WP_350327577.1	type II secretion system protein M	-
OHJ31_RS09795 (OHJ31_09765)	-	2195876..2196622 (+)	747	WP_350327578.1	type II secretion system protein N	-
OHJ31_RS09800 (OHJ31_09770)	pilD	2196730..2197575 (+)	846	WP_205947788.1	A24 family peptidase	Machinery gene
OHJ31_RS09805 (OHJ31_09775)	ypdK	2197718..2197792 (-)	75	WP_099606229.1	membrane protein YpdK	-
OHJ31_RS09810 (OHJ31_09780)	-	2198149..2199174 (-)	1026	WP_194430533.1	LLM class flavin-dependent oxidoreductase	-
OHJ31_RS09815 (OHJ31_09785)	-	2199650..2200714 (+)	1065	WP_350327579.1	ABC transporter substrate-binding protein	-
OHJ31_RS09820 (OHJ31_09790)	-	2200711..2201748 (+)	1038	WP_181838176.1	iron ABC transporter permease	-
OHJ31_RS09825 (OHJ31_09795)	-	2201750..2202520 (+)	771	WP_350327580.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31261.37 Da
• Isoelectric Point: 7.1428

>NTDB_id=749119 OHJ31_RS09800 WP_205947788.1 2196730..2197575(+) (pilD) [Pectobacterium aroidearum strain B2-6]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=749119 OHJ31_RS09800 WP_205947788.1 2196730..2197575(+) (pilD) [Pectobacterium aroidearum strain B2-6]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCTTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGTTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTCCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGGGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCCTGGCTGGC
GATTGGCGGCGTATTCGGTGTGATAATAAACGGACTCTATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.805	91.459	0.456
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	42.336	97.509	0.413
pilD	Acinetobacter nosocomialis M2	42.336	97.509	0.413