Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHJ31_RS00270 Genome accession   NZ_CP109769
Coordinates   73002..74384 (+) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium aroidearum strain B2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68002..79384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHJ31_RS00250 (OHJ31_00250) prfC 68301..69890 (-) 1590 WP_180778879.1 peptide chain release factor 3 -
  OHJ31_RS00255 (OHJ31_00255) - 70196..71113 (+) 918 WP_181845071.1 hypothetical protein -
  OHJ31_RS00260 (OHJ31_00260) - 71168..71863 (-) 696 WP_194431529.1 YtjB family periplasmic protein -
  OHJ31_RS00265 (OHJ31_00265) serB 72007..72984 (+) 978 WP_012773161.1 phosphoserine phosphatase -
  OHJ31_RS00270 (OHJ31_00270) radA 73002..74384 (+) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  OHJ31_RS00275 (OHJ31_00275) nadR 74514..75767 (+) 1254 WP_256599348.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  OHJ31_RS00280 (OHJ31_00280) - 75764..76405 (-) 642 WP_180778882.1 5-formyltetrahydrofolate cyclo-ligase -
  OHJ31_RS00290 (OHJ31_00290) zapA 76702..77031 (-) 330 WP_012773157.1 cell division protein ZapA -
  OHJ31_RS00295 (OHJ31_00295) - 77224..77811 (+) 588 WP_012773156.1 YecA family protein -
  OHJ31_RS00300 (OHJ31_00300) pepP 77902..79221 (+) 1320 WP_194431752.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=749103 OHJ31_RS00270 WP_012773160.1 73002..74384(+) (radA) [Pectobacterium aroidearum strain B2-6]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=749103 OHJ31_RS00270 WP_012773160.1 73002..74384(+) (radA) [Pectobacterium aroidearum strain B2-6]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTCGCATCGGCGTCAGTATCACGTTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTTTCAGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACAGGT
TTTCAGGAGTTTGACCGCGTTTTGGGCGGCGGCGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TACAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGTTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACAAAAGACGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAGCAAGGACTACGCGAGGTCAGCAATCCGTCGGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGTCGAACCCACGCCGTGTGGCGGTCGGGCTGGAGCAAAACCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGTGTCAAAGTCACCGAAACCAGCGCCG
ACCTCGCGTTGCTATTATCACTGGTTTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43