Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OI984_RS04550 Genome accession   NZ_CP109753
Coordinates   887405..888031 (-) Length   208 a.a.
NCBI ID   WP_021240856.1    Uniprot ID   A0AB35EUS1
Organism   Enterobacter roggenkampii strain 2017-45-131-01A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 882405..893031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI984_RS04535 (OI984_04540) helD 882642..884696 (-) 2055 WP_045352007.1 DNA helicase IV -
  OI984_RS04540 (OI984_04545) - 884820..885266 (+) 447 WP_023343701.1 YccF domain-containing protein -
  OI984_RS04545 (OI984_04550) yccS 885286..887448 (+) 2163 WP_032651202.1 YccS family putative transporter -
  OI984_RS04550 (OI984_04555) sxy/tfoX 887405..888031 (-) 627 WP_021240856.1 TfoX/Sxy family DNA transformation protein Regulator
  OI984_RS04555 (OI984_04560) sulA 888249..888758 (+) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  OI984_RS04560 (OI984_04565) ompA 889113..890168 (+) 1056 WP_023292865.1 porin OmpA -
  OI984_RS04565 (OI984_04570) matP 890234..890686 (-) 453 WP_008499929.1 macrodomain Ter protein MatP -
  OI984_RS04570 (OI984_04575) - 890873..892633 (+) 1761 WP_023327040.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23914.49 Da        Isoelectric Point: 9.6030

>NTDB_id=748971 OI984_RS04550 WP_021240856.1 887405..888031(-) (sxy/tfoX) [Enterobacter roggenkampii strain 2017-45-131-01A]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLYEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=748971 OI984_RS04550 WP_021240856.1 887405..888031(-) (sxy/tfoX) [Enterobacter roggenkampii strain 2017-45-131-01A]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
ATGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCAATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567