Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OI981_RS21980 Genome accession   NZ_CP109744
Coordinates   4515255..4515869 (-) Length   204 a.a.
NCBI ID   WP_003831996.1    Uniprot ID   A0A5A9E513
Organism   Citrobacter portucalensis strain 2017-45-163     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4510255..4520869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI981_RS21965 (OI981_21955) helD 4510480..4512534 (-) 2055 WP_060682457.1 DNA helicase IV -
  OI981_RS21970 (OI981_21960) - 4512660..4513106 (+) 447 WP_003831998.1 YccF domain-containing protein -
  OI981_RS21975 (OI981_21965) yccS 4513116..4515277 (+) 2162 Protein_4291 YccS family putative transporter -
  OI981_RS21980 (OI981_21970) sxy/tfoX 4515255..4515869 (-) 615 WP_003831996.1 TfoX/Sxy family DNA transformation protein Regulator
  OI981_RS21985 (OI981_21975) sulA 4516087..4516595 (+) 509 Protein_4293 SOS-induced cell division inhibitor SulA -
  OI981_RS21990 (OI981_21980) ompA 4516952..4517998 (+) 1047 WP_220708982.1 porin OmpA -
  OI981_RS21995 (OI981_21985) matP 4518087..4518539 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  OI981_RS22000 (OI981_21990) - 4518725..4520485 (+) 1761 WP_032942904.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.54 Da        Isoelectric Point: 8.6049

>NTDB_id=748967 OI981_RS21980 WP_003831996.1 4515255..4515869(-) (sxy/tfoX) [Citrobacter portucalensis strain 2017-45-163]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=748967 OI981_RS21980 WP_003831996.1 4515255..4515869(-) (sxy/tfoX) [Citrobacter portucalensis strain 2017-45-163]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5A9E513

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676