Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HVMH_RS10530 Genome accession   NZ_AP020335
Coordinates   2214080..2215144 (+) Length   354 a.a.
NCBI ID   WP_029912255.1    Uniprot ID   -
Organism   Hydrogenovibrio marinus strain MH-110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209080..2220144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVMH_RS10510 - 2209745..2210002 (+) 258 WP_081822760.1 VIT1/CCC1 transporter family protein -
  HVMH_RS10515 (HVMH_2074) - 2210070..2211221 (+) 1152 WP_051623107.1 GGDEF domain-containing protein -
  HVMH_RS10520 (HVMH_2075) - 2211244..2212548 (-) 1305 WP_232087768.1 pitrilysin family protein -
  HVMH_RS10525 (HVMH_2076) - 2212545..2213936 (-) 1392 WP_232087769.1 pitrilysin family protein -
  HVMH_RS10530 (HVMH_2077) pilA 2214080..2215144 (+) 1065 WP_029912255.1 signal recognition particle-docking protein FtsY Machinery gene
  HVMH_RS10535 (HVMH_2078) - 2215150..2216070 (+) 921 WP_051623106.1 DUF2914 domain-containing protein -
  HVMH_RS10540 (HVMH_2079) - 2216076..2216735 (+) 660 WP_035629807.1 transglycosylase SLT domain-containing protein -
  HVMH_RS10545 (HVMH_2080) fabB 2216795..2218015 (-) 1221 WP_029912248.1 beta-ketoacyl-ACP synthase I -
  HVMH_RS10550 (HVMH_2081) fabA 2218018..2218533 (-) 516 WP_029912246.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38608.18 Da        Isoelectric Point: 4.9640

>NTDB_id=74889 HVMH_RS10530 WP_029912255.1 2214080..2215144(+) (pilA) [Hydrogenovibrio marinus strain MH-110]
MFSFLKRKDNLNKALEENAEQMSEENVSYETFSQTDAPSKTQAITEEKSPSFFARLKSGLKKTRQGFTDNLANLILGKKE
IDDELLEELEMVLLGADIGVDATDKIIQNLTEQVSRKELKDPKALISALKLQLMALLEPVAQPLEIDTSSHKPFVILMVG
VNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNQVPVIAQNTGADSAAVIFDAIQSATAKKIDVLI
ADTAGRLHTQSNLMEELKKVKRVIQKVDNSAPHEVMLVLDAGTGQNAMNQAQQFHDAMELTGLTLTKLDGTAKGGIIFAL
AEKTGLPVRFIGVGESIDDLRTFNAKDFSEALFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=74889 HVMH_RS10530 WP_029912255.1 2214080..2215144(+) (pilA) [Hydrogenovibrio marinus strain MH-110]
ATGTTCAGTTTTTTAAAACGAAAAGACAACTTAAACAAAGCGTTAGAAGAGAACGCTGAGCAAATGTCTGAAGAAAATGT
TTCATATGAAACATTTTCGCAAACTGATGCCCCATCTAAAACCCAGGCAATTACCGAGGAAAAATCTCCCTCGTTCTTCG
CCCGCCTAAAATCTGGACTAAAGAAAACAAGGCAAGGCTTTACAGATAATCTTGCTAACTTGATTCTTGGAAAAAAGGAA
ATAGATGACGAACTCCTTGAAGAACTTGAAATGGTTCTTTTAGGTGCTGACATCGGTGTAGACGCGACGGATAAAATCAT
CCAGAACCTAACTGAACAAGTCTCCAGAAAAGAACTCAAAGACCCGAAGGCGCTAATAAGTGCTTTAAAACTTCAATTAA
TGGCGTTACTTGAACCCGTAGCACAGCCTTTAGAAATTGATACCTCGAGCCACAAGCCTTTTGTGATTTTGATGGTCGGC
GTCAACGGCGTTGGAAAAACAACCACCATTGGCAAATTGGCTAAGAAGTTCCAAAACGAAGGTAAGTCAGTCATGCTTGC
AGCTGGTGATACTTTTCGTGCCGCCGCTGTTGAACAACTTCAAACTTGGGGAGAGCGCAACCAAGTGCCTGTAATCGCGC
AAAATACCGGAGCAGACTCTGCTGCGGTTATTTTTGATGCCATCCAGTCTGCAACTGCAAAAAAAATCGATGTCCTTATC
GCAGATACCGCGGGCCGATTGCATACTCAATCCAACTTAATGGAAGAATTAAAAAAGGTTAAGCGCGTTATTCAGAAAGT
CGATAACTCAGCGCCACACGAAGTTATGTTGGTGCTTGATGCAGGCACAGGGCAAAACGCCATGAACCAGGCTCAACAAT
TCCATGATGCCATGGAGCTGACAGGTTTGACGCTTACAAAACTTGATGGAACAGCGAAAGGTGGAATTATTTTTGCTCTT
GCTGAAAAAACCGGCTTACCTGTCAGATTCATTGGTGTGGGCGAAAGCATTGATGACTTACGAACTTTTAATGCAAAGGA
CTTTTCAGAAGCCTTATTTGATTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(68-130)

SRP54-type protein, GTPase domain (SRP54)

(153-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

57.051

88.136

0.503

Multiple sequence alignment