Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OI909_RS17970 Genome accession   NZ_CP109694
Coordinates   3661749..3663182 (+) Length   477 a.a.
NCBI ID   WP_047060252.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2017-45-54-05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3656749..3668182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI909_RS17940 (OI909_17935) - 3657316..3658293 (+) 978 WP_039260412.1 calcium/sodium antiporter -
  OI909_RS17945 (OI909_17940) kdsD 3658307..3659293 (+) 987 WP_032659705.1 arabinose-5-phosphate isomerase KdsD -
  OI909_RS17950 (OI909_17945) kdsC 3659308..3659874 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  OI909_RS17955 (OI909_17950) lptC 3659871..3660446 (+) 576 WP_182071509.1 LPS export ABC transporter periplasmic protein LptC -
  OI909_RS17960 (OI909_17955) lptA 3660415..3660969 (+) 555 WP_033146750.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  OI909_RS17965 (OI909_17960) lptB 3660976..3661701 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  OI909_RS17970 (OI909_17965) rpoN/rpoN1 3661749..3663182 (+) 1434 WP_047060252.1 RNA polymerase factor sigma-54 Machinery gene
  OI909_RS17975 (OI909_17970) hpf 3663205..3663492 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  OI909_RS17980 (OI909_17975) ptsN 3663575..3664066 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OI909_RS17985 (OI909_17980) rapZ 3664112..3664966 (+) 855 WP_014885397.1 RNase adapter RapZ -
  OI909_RS17990 (OI909_17985) npr 3664963..3665235 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  OI909_RS17995 (OI909_17990) mtgA 3665275..3666000 (-) 726 WP_182071508.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  OI909_RS18000 (OI909_17995) elbB 3665997..3666650 (-) 654 WP_284593461.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54197.95 Da        Isoelectric Point: 4.3173

>NTDB_id=748874 OI909_RS17970 WP_047060252.1 3661749..3663182(+) (rpoN/rpoN1) [Enterobacter asburiae strain 2017-45-54-05]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEIEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWLDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=748874 OI909_RS17970 WP_047060252.1 3661749..3663182(+) (rpoN/rpoN1) [Enterobacter asburiae strain 2017-45-54-05]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCTACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGAAGAGATTGAACTTGAGGAGATCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGCTCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCACTCGATCCCCGCCCGGGACAGTCGATCCAAACCAG
CGAGCCCGAGTACGTGATCCCGGATGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGT
AGCAATCTTCAGGAAGCGCGATGGTTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAAATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482