Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OI909_RS04900 Genome accession   NZ_CP109694
Coordinates   1024987..1025613 (+) Length   208 a.a.
NCBI ID   WP_182071691.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 2017-45-54-05     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1019987..1030613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OI909_RS04880 (OI909_04875) - 1020387..1022147 (-) 1761 WP_182071692.1 Lon protease family protein -
  OI909_RS04885 (OI909_04880) matP 1022334..1022786 (+) 453 WP_032658161.1 macrodomain Ter protein MatP -
  OI909_RS04890 (OI909_04885) ompA 1022850..1023905 (-) 1056 WP_023311028.1 porin OmpA -
  OI909_RS04895 (OI909_04890) sulA 1024260..1024769 (-) 510 WP_033145120.1 SOS-induced cell division inhibitor SulA -
  OI909_RS04900 (OI909_04895) sxy/tfoX 1024987..1025613 (+) 627 WP_182071691.1 TfoX/Sxy family DNA transformation protein Regulator
  OI909_RS04905 (OI909_04900) yccS 1025570..1027732 (-) 2163 WP_033145122.1 YccS family putative transporter -
  OI909_RS04910 (OI909_04905) - 1027752..1028198 (-) 447 WP_023311032.1 YccF domain-containing protein -
  OI909_RS04915 (OI909_04910) helD 1028322..1030376 (+) 2055 WP_182071690.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23877.42 Da        Isoelectric Point: 9.2151

>NTDB_id=748862 OI909_RS04900 WP_182071691.1 1024987..1025613(+) (sxy/tfoX) [Enterobacter asburiae strain 2017-45-54-05]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITDEETLRALGARASWLKMRAKN
KALGIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=748862 OI909_RS04900 WP_182071691.1 1024987..1025613(+) (sxy/tfoX) [Enterobacter asburiae strain 2017-45-54-05]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AAGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATTACCGATGAGGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAAAAC
AAAGCGCTCGGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
TCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.621

97.596

0.572