Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OBG92_RS25200 Genome accession   NZ_CP109657
Coordinates   5327469..5328806 (+) Length   445 a.a.
NCBI ID   WP_264315614.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Zw26     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5322469..5333806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS25175 (OBG92_04958) pgeF 5322614..5323342 (-) 729 WP_034081438.1 peptidoglycan editing factor PgeF -
  OBG92_RS25180 (OBG92_04959) rluD 5323339..5324301 (-) 963 WP_003150035.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OBG92_RS25185 (OBG92_04960) - 5324447..5325472 (+) 1026 WP_012077305.1 outer membrane protein assembly factor BamD -
  OBG92_RS25190 (OBG92_04961) - 5325626..5325871 (+) 246 WP_003150030.1 PP0621 family protein -
  OBG92_RS25195 (OBG92_04962) pilS 5325861..5327453 (+) 1593 WP_058129588.1 two-component system sensor histidine kinase PilS Regulator
  OBG92_RS25200 (OBG92_04963) pilR 5327469..5328806 (+) 1338 WP_264315614.1 two-component system response regulator PilR Regulator
  OBG92_RS25205 (OBG92_04964) thiO 5328852..5329946 (-) 1095 WP_058146146.1 glycine oxidase ThiO -
  OBG92_RS25210 (OBG92_04965) - 5330081..5330590 (+) 510 WP_003150026.1 GspH/FimT family protein -
  OBG92_RS25215 (OBG92_04966) - 5330696..5331202 (+) 507 WP_012077308.1 Tfp pilus assembly protein FimT/FimU -
  OBG92_RS25220 (OBG92_04967) pilV 5331193..5331750 (+) 558 WP_034081446.1 type IV pilus modification protein PilV Machinery gene
  OBG92_RS25225 (OBG92_04968) pilW 5331747..5332571 (+) 825 WP_034081447.1 type 4a pilus minor pilin PilW -
  OBG92_RS25230 (OBG92_04969) pilX 5332568..5333155 (+) 588 WP_256157942.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49746.07 Da        Isoelectric Point: 6.1219

>NTDB_id=748821 OBG92_RS25200 WP_264315614.1 5327469..5328806(+) (pilR) [Pseudomonas aeruginosa strain Zw26]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPTELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MPMQVKLLRAIQEKAVRAVGGQQEIGVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCENDQIQPHDLRLADAPGASQDGAASLSEIDNLED
YLEDIERKPIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=748821 OBG92_RS25200 WP_264315614.1 5327469..5328806(+) (pilR) [Pseudomonas aeruginosa strain Zw26]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAGCTGCTGGAAATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAACCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGACGGTAGCGGCCTCGACCTGGTGCAGTACATCCAGCAGCGTCACCCGCAGACCCCGGTCGCCATG
ATCACCGCCTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTCGA
CCTCGGCCGCCTGCGCGAACTGGTGGCGACCGCCCTGCGCCTGCGCAATCCGGAAGCCGAGGAAGCGCCGGTAGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCGCTGCGCAACCAGATCGGCAAGCTGGCGCGTAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCCCGCCTGATCCACGAGCAGGGGCCGCGCATCGAGCGACCGTT
CGTGCCGGTCAACTGCGGCGCGATCCCTACCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAGGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGTACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGCCGATGCAGGTCAAGCTGCTCCGCGCAATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGATCGGCGT
CGACGTCCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAGGTCGGCGCCGGGCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTCATCGAATTGCGCGTTCCGCCCCTGCGCGAACGCCGCGAGGACATCCCGCTGCTGGCCGAGCGCATC
CTCAAACGCCTGGCCGGCGATACCGGCTTGCCGGCCGCCCGCCTGACCGGCGATGCCCAGGAAAAGCTGAAGAACTATCG
CTTCCCCGGCAACGTGCGTGAACTGGAGAACATGCTGGAGCGCGCCTACACGCTGTGCGAGAACGACCAGATCCAGCCCC
ACGACCTGCGCCTGGCCGACGCGCCGGGCGCCAGCCAGGACGGCGCGGCGAGCCTGAGCGAGATAGACAATCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCCGATCATGCAGGCTCTCGAGGAGACCCGCTGGAACCGCACTGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGTTCGATGCGTTATCGCCTGAAGAAACTCGGCATAGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

98.427

100

0.984
  pilR Acinetobacter baumannii strain A118

51.416

100

0.53
  luxO Vibrio cholerae strain A1552

38.063

99.775

0.38