Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OBG92_RS24340 Genome accession   NZ_CP109657
Coordinates   5151329..5152822 (+) Length   497 a.a.
NCBI ID   WP_034080943.1    Uniprot ID   A0A2R3IXQ9
Organism   Pseudomonas aeruginosa strain Zw26     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5146329..5157822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS24310 (OBG92_04787) - 5146544..5147353 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  OBG92_RS24315 (OBG92_04788) kdsD 5147763..5148743 (+) 981 WP_170870649.1 arabinose-5-phosphate isomerase KdsD -
  OBG92_RS24320 (OBG92_04789) - 5148743..5149282 (+) 540 WP_058136771.1 KdsC family phosphatase -
  OBG92_RS24325 (OBG92_04790) lptC 5149291..5149863 (+) 573 WP_003155089.1 LPS export ABC transporter periplasmic protein LptC -
  OBG92_RS24330 (OBG92_04791) lptA 5149850..5150377 (+) 528 WP_012077214.1 lipopolysaccharide transport periplasmic protein LptA -
  OBG92_RS24335 (OBG92_04792) lptB 5150377..5151102 (+) 726 WP_003155093.1 LPS export ABC transporter ATP-binding protein -
  OBG92_RS24340 (OBG92_04793) rpoN/rpoN1 5151329..5152822 (+) 1494 WP_034080943.1 RNA polymerase factor sigma-54 Machinery gene
  OBG92_RS24345 (OBG92_04794) hpf 5152900..5153208 (+) 309 WP_003155096.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  OBG92_RS24350 (OBG92_04795) ptsN 5153222..5153686 (+) 465 WP_003155098.1 PTS IIA-like nitrogen regulatory protein PtsN -
  OBG92_RS24355 (OBG92_04796) rapZ 5153688..5154548 (+) 861 WP_003155100.1 RNase adapter RapZ -
  OBG92_RS24360 (OBG92_04797) - 5154578..5154850 (+) 273 WP_003155102.1 HPr family phosphocarrier protein -
  OBG92_RS24365 (OBG92_04798) - 5154922..5155824 (-) 903 WP_034080945.1 ZIP family metal transporter -
  OBG92_RS24370 (OBG92_04799) - 5155891..5156505 (-) 615 WP_034080946.1 superoxide dismutase -
  OBG92_RS24375 (OBG92_04800) - 5156518..5156966 (-) 449 Protein_4822 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55940.15 Da        Isoelectric Point: 4.4128

>NTDB_id=748815 OBG92_RS24340 WP_034080943.1 5151329..5152822(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain Zw26]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDGSDPLADGAEQATSAPQESALQE
STTPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSSDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAALDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPPATPWLDEALRLV
SDYLDLLGGRDYGQLMRRMKLKEDELRLVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=748815 OBG92_RS24340 WP_034080943.1 5151329..5152822(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain Zw26]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCTCAGCTGCAACAGGCCATACGCCTTCTCCA
GCTCTCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACGGCAGCGACCCGCTCGCCGATGGCGCCGAACAGGCAACCAGCGCGCCGCAGGAGAGCGCCCTCCAGGAA
AGCACCACGCCCAGCGTAGAAAGCCTCGACGACGACCAGTGGAGCGAGCGCATCCCCAGCGAACTGCCGGTGGATACCGC
CTGGGAGGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAGCGACGACGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTGAACCTGGCGCCGATGTCGGACACCGACCGCATGATCGCG
GTGACCATCATCGACAGCATCAACAATGACGGCTATCTGGAGGAGTCCCTCGAGGAGATCCTCGCCGCCCTCGATCCGGA
GCTGGACGTCGAGCTCGACGAAGTCGAAGTCGTGCTGCGCCGCATCCAGCAGCTGGAGCCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGTTGCTGCAACTGCGCCAGCTGCCACCCGCCACGCCCTGGCTGGACGAAGCCCTGCGCCTGGTT
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACGGCCAGTTGATGCGGCGCATGAAGCTCAAGGAAGACGAGTTGCG
CCTGGTCATCGAGCTGATCCAGTGCCTGCATCCACGGCCCGGCTCGCAGATCGAGTCGAGCGAGGCCGAATACATCGTCC
CGGACGTCATCGTACGCAAGGACAACGAGCGCTGGCTGGTGGAACTGAACCAGGAGGCGATGCCACGCCTGCGTGTCAAC
GCCACCTATGCCGGCATGGTCCGCCGTGCCGACAGCAGTGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCGCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAGACGCTGATGAAGGTGGCGACGCAGATCGTCGAACACCAGCGTGGCT
TCCTCGACTACGGCGAGGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAGTCGACC
ATTTCGCGGGTCACCACGCAGAAGTACATGCATACGCCGCGCGGTATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGCACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTAGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAG
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IXQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.785

100

0.481