Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OBG92_RS10040 Genome accession   NZ_CP109657
Coordinates   2140044..2140679 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain Zw26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135044..2145679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS10010 (OBG92_01980) - 2135739..2136983 (+) 1245 WP_003156869.1 lipoprotein-releasing ABC transporter permease subunit -
  OBG92_RS10015 (OBG92_01981) - 2137084..2137617 (-) 534 WP_034078473.1 DUF2062 domain-containing protein -
  OBG92_RS30840 (OBG92_01982) - 2137748..2139971 (+) 2224 Protein_1979 DNA internalization-related competence protein ComEC/Rec2 -
  OBG92_RS10040 (OBG92_01983) exbB 2140044..2140679 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OBG92_RS10045 (OBG92_01984) - 2140676..2141116 (+) 441 WP_058130156.1 ExbD/TolR family protein -
  OBG92_RS10050 (OBG92_01985) lpxK 2141116..2142114 (+) 999 WP_264315812.1 tetraacyldisaccharide 4'-kinase -
  OBG92_RS10055 (OBG92_01986) - 2142152..2142337 (+) 186 WP_003157522.1 Trm112 family protein -
  OBG92_RS10060 (OBG92_01987) kdsB 2142337..2143101 (+) 765 WP_012075164.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OBG92_RS10065 (OBG92_01988) - 2143101..2143565 (+) 465 WP_012075165.1 low molecular weight protein-tyrosine-phosphatase -
  OBG92_RS10070 (OBG92_01989) murB 2143562..2144581 (+) 1020 WP_058130157.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=748807 OBG92_RS10040 WP_003091163.1 2140044..2140679(+) (exbB) [Pseudomonas aeruginosa strain Zw26]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=748807 OBG92_RS10040 WP_003091163.1 2140044..2140679(+) (exbB) [Pseudomonas aeruginosa strain Zw26]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCACTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCTTCCGGCGTCATCCACGAACTTGAGCGCTATCT
CAACGCCCTCGGCACCATCGCCGCGATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCGCTGATCACCACGGCCGCC
GGCCTGCTGGTGGCGATCCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGTCGCGTCGACGAGCTGGTGATCGCCATGGA
ACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81