Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   OKF33_RS07175 Genome accession   NZ_CP109654
Coordinates   1383676..1384857 (-) Length   393 a.a.
NCBI ID   WP_134191490.1    Uniprot ID   -
Organism   Campylobacter coli strain 10-02932     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1378676..1389857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS07150 fliL 1379811..1380347 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  OKF33_RS07155 acpS 1380347..1380694 (+) 348 WP_002779165.1 holo-ACP synthase -
  OKF33_RS07160 - 1380697..1381119 (-) 423 WP_002779166.1 hypothetical protein -
  OKF33_RS07165 - 1381116..1382486 (-) 1371 WP_002783822.1 cytochrome P450 -
  OKF33_RS07170 - 1382483..1383604 (-) 1122 WP_002787825.1 hypothetical protein -
  OKF33_RS07175 kpsS 1383676..1384857 (-) 1182 WP_134191490.1 capsule biosynthesis protein Regulator
  OKF33_RS07180 - 1384854..1386881 (-) 2028 WP_004289220.1 capsular polysaccharide biosynthesis protein -
  OKF33_RS07185 - 1386887..1387528 (-) 642 WP_002826780.1 HAD-IA family hydrolase -
  OKF33_RS07190 - 1387518..1388507 (-) 990 WP_002826781.1 4-hydroxy-2-ketovalerate aldolase -
  OKF33_RS07195 - 1388520..1389155 (-) 636 WP_002826782.1 cytidylyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46403.07 Da        Isoelectric Point: 9.9738

>NTDB_id=748788 OKF33_RS07175 WP_134191490.1 1383676..1384857(-) (kpsS) [Campylobacter coli strain 10-02932]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWFFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=748788 OKF33_RS07175 WP_134191490.1 1383676..1384857(-) (kpsS) [Campylobacter coli strain 10-02932]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGCTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGTTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAGTTCAATGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.5

99.746

0.873