Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OKF33_RS06880 Genome accession   NZ_CP109654
Coordinates   1321959..1322927 (+) Length   322 a.a.
NCBI ID   WP_002825229.1    Uniprot ID   -
Organism   Campylobacter coli strain 10-02932     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316959..1327927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS06855 - 1317811..1318539 (-) 729 WP_264306046.1 phosphatidate cytidylyltransferase -
  OKF33_RS06860 - 1318548..1318886 (-) 339 WP_002825237.1 hypothetical protein -
  OKF33_RS06865 - 1318889..1320196 (-) 1308 WP_264306047.1 NFACT family protein -
  OKF33_RS06870 - 1320259..1320834 (+) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  OKF33_RS06875 - 1320933..1321826 (+) 894 WP_234888882.1 phospholipase A -
  OKF33_RS06880 ceuB 1321959..1322927 (+) 969 WP_002825229.1 ABC transporter permease Machinery gene
  OKF33_RS06885 - 1322920..1323858 (+) 939 WP_057033168.1 iron chelate uptake ABC transporter family permease subunit -
  OKF33_RS06890 - 1323855..1324610 (+) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  OKF33_RS06895 - 1324625..1325614 (+) 990 WP_264306048.1 siderophore ABC transporter substrate-binding protein -
  OKF33_RS06900 - 1325780..1326412 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35551.38 Da        Isoelectric Point: 9.5069

>NTDB_id=748786 OKF33_RS06880 WP_002825229.1 1321959..1322927(+) (ceuB) [Campylobacter coli strain 10-02932]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTLIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSVGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=748786 OKF33_RS06880 WP_002825229.1 1321959..1322927(+) (ceuB) [Campylobacter coli strain 10-02932]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACACAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCGTTGGAGTTATACCTTTTTTAGGTCTTATCATTCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891