Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   OKF33_RS03120 Genome accession   NZ_CP109654
Coordinates   607484..607930 (+) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain 10-02932     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602484..612930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS03100 - 603436..604860 (+) 1425 WP_002842799.1 anaerobic C4-dicarboxylate transporter -
  OKF33_RS03105 uvrB 604895..606868 (-) 1974 WP_002787398.1 excinuclease ABC subunit UvrB -
  OKF33_RS03110 - 607022..607252 (+) 231 WP_002776426.1 hypothetical protein -
  OKF33_RS03115 - 607242..607487 (+) 246 WP_002776428.1 hypothetical protein -
  OKF33_RS03120 Cj0683 607484..607930 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  OKF33_RS03125 - 607927..609765 (+) 1839 WP_002787399.1 primosomal protein N' -
  OKF33_RS03130 ispG 609825..610898 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  OKF33_RS03135 flgH 610982..611680 (-) 699 WP_002793310.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=748775 OKF33_RS03120 WP_002776437.1 607484..607930(+) (Cj0683) [Campylobacter coli strain 10-02932]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=748775 OKF33_RS03120 WP_002776437.1 607484..607930(+) (Cj0683) [Campylobacter coli strain 10-02932]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581