Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   N8A73_RS11550 Genome accession   NZ_CP109651
Coordinates   2254346..2255116 (-) Length   256 a.a.
NCBI ID   WP_176966981.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2249346..2260116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS11530 - 2249439..2250260 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  N8A73_RS11535 - 2250286..2250924 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  N8A73_RS11540 glyS 2251092..2253137 (-) 2046 WP_065214625.1 glycine--tRNA ligase subunit beta -
  N8A73_RS11545 glyQ 2253130..2254017 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  N8A73_RS11550 recO 2254346..2255116 (-) 771 WP_176966981.1 DNA repair protein RecO Machinery gene
  N8A73_RS11555 - 2255152..2255295 (-) 144 WP_003217288.1 YqzL family protein -
  N8A73_RS11560 era 2255444..2256349 (-) 906 WP_176966980.1 GTPase Era -
  N8A73_RS11565 - 2256342..2256740 (-) 399 WP_008356263.1 cytidine deaminase -
  N8A73_RS11570 - 2256854..2257240 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  N8A73_RS11575 ybeY 2257218..2257697 (-) 480 WP_041106915.1 rRNA maturation RNase YbeY -
  N8A73_RS11580 - 2257698..2259809 (-) 2112 WP_404841414.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29222.94 Da        Isoelectric Point: 8.9833

>NTDB_id=748749 N8A73_RS11550 WP_176966981.1 2254346..2255116(-) (recO) [Bacillus safensis strain LG01]
MLIKSEGIVLRTTDYGETNKIVTLLTRKHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAHAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=748749 N8A73_RS11550 WP_176966981.1 2254346..2255116(-) (recO) [Bacillus safensis strain LG01]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AAAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCACATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGTACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTGCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

74.609

100

0.746