Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N8A73_RS10065 Genome accession   NZ_CP109651
Coordinates   1990714..1991325 (+) Length   203 a.a.
NCBI ID   WP_065214702.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985714..1996325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS10025 - 1985860..1986978 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  N8A73_RS10030 - 1987036..1987542 (-) 507 WP_034280784.1 PTS glucose transporter subunit IIA -
  N8A73_RS10035 - 1987712..1988131 (+) 420 WP_176967037.1 Hsp20/alpha crystallin family protein -
  N8A73_RS10040 - 1988152..1988613 (-) 462 WP_061109277.1 YppG family protein -
  N8A73_RS10045 - 1988722..1989102 (-) 381 WP_224426683.1 YppE family protein -
  N8A73_RS10050 - 1989152..1989388 (-) 237 WP_025093077.1 DUF5446 family protein -
  N8A73_RS10055 sspM 1989583..1989687 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  N8A73_RS10060 - 1989711..1990667 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  N8A73_RS10065 recU 1990714..1991325 (+) 612 WP_065214702.1 Holliday junction resolvase RecU Machinery gene
  N8A73_RS10070 - 1991369..1994083 (+) 2715 WP_065214701.1 PBP1A family penicillin-binding protein -
  N8A73_RS10075 - 1994120..1994629 (-) 510 WP_065214700.1 YpoC family protein -
  N8A73_RS10080 nth 1994626..1995288 (-) 663 WP_034280464.1 endonuclease III -
  N8A73_RS10085 - 1995306..1996010 (-) 705 WP_034280461.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23347.55 Da        Isoelectric Point: 9.5430

>NTDB_id=748743 N8A73_RS10065 WP_065214702.1 1990714..1991325(+) (recU) [Bacillus safensis strain LG01]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESK

Nucleotide


Download         Length: 612 bp        

>NTDB_id=748743 N8A73_RS10065 WP_065214702.1 1990714..1991325(+) (recU) [Bacillus safensis strain LG01]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAACGGCCGTAAATCCATTAGTAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

99.507

0.729