Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   N8A73_RS06885 Genome accession   NZ_CP109651
Coordinates   1346293..1346571 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain LG01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341293..1351571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS06860 - 1341385..1341660 (-) 276 WP_024424743.1 hypothetical protein -
  N8A73_RS06865 - 1341804..1343423 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  N8A73_RS06870 - 1343462..1344694 (-) 1233 WP_034281621.1 aminopeptidase -
  N8A73_RS06875 - 1344803..1344934 (-) 132 WP_003210922.1 protein YkpC -
  N8A73_RS06880 mreBH 1345009..1346016 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  N8A73_RS06885 abrB 1346293..1346571 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  N8A73_RS06890 - 1346717..1348027 (+) 1311 WP_046310821.1 ATP-binding protein -
  N8A73_RS06895 - 1348032..1348868 (+) 837 WP_070325777.1 gamma-glutamylcyclotransferase -
  N8A73_RS06900 - 1348906..1349574 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  N8A73_RS06905 ade 1349837..1351567 (+) 1731 WP_264316087.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=748737 N8A73_RS06885 WP_024424746.1 1346293..1346571(+) (abrB) [Bacillus safensis strain LG01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=748737 N8A73_RS06885 WP_024424746.1 1346293..1346571(+) (abrB) [Bacillus safensis strain LG01]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543