Detailed information NTG0748734

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N8A73_RS06470
• Genome accession: NZ_CP109651
• Coordinates: 1267799..1269901 (-)
• Length: 700 a.a.
• NCBI ID: WP_120207160.1
• Uniprot ID: -
• Organism: Bacillus safensis strain LG01
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1262799..1274901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8A73_RS06445	-	1263216..1263458 (+)	243	WP_024424676.1	aspartyl-phosphate phosphatase Spo0E family protein	-
N8A73_RS06450	-	1263505..1265010 (-)	1506	WP_034281538.1	ATP-binding protein	-
N8A73_RS06455	-	1265215..1265670 (+)	456	WP_034281539.1	MarR family winged helix-turn-helix transcriptional regulator	-
N8A73_RS06460	motB	1265864..1266634 (-)	771	WP_217008565.1	flagellar motor protein MotB	-
N8A73_RS06465	motA	1266627..1267421 (-)	795	WP_024424680.1	flagellar motor stator protein MotA	-
N8A73_RS06470	clpC	1267799..1269901 (-)	2103	WP_120207160.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
N8A73_RS06475	-	1270146..1271189 (+)	1044	WP_034623360.1	membrane protein	-
N8A73_RS06480	queC	1271465..1272121 (+)	657	WP_024424683.1	7-cyano-7-deazaguanine synthase QueC	-
N8A73_RS06485	queD	1272122..1272562 (+)	441	WP_034281544.1	6-carboxytetrahydropterin synthase QueD	-
N8A73_RS06490	queE	1272555..1273286 (+)	732	WP_176967482.1	7-carboxy-7-deazaguanine synthase QueE	-
N8A73_RS06495	queF	1273302..1273799 (+)	498	WP_024426839.1	preQ(1) synthase	-
N8A73_RS06500	-	1274276..1274632 (-)	357	WP_061109758.1	winged helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 700 a.a.
• Molecular weight: 77946.56 Da
• Isoelectric Point: 5.0736

>NTDB_id=748734 N8A73_RS06470 WP_120207160.1 1267799..1269901(-) (clpC) [Bacillus safensis strain LG01]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAASHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDQLTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSADKTVKVGFQSDQEEAIEEQSLIDSLSSYFKPEFLNRFDSIIQFESLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide

• Length: 2103 bp

>NTDB_id=748734 N8A73_RS06470 WP_120207160.1 1267799..1269901(-) (clpC) [Bacillus safensis strain LG01]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTCAGCTTTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAAGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGAGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCTGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCACCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGCGAGCTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTTATCGTAGATGAGCCAACACAAGATGAAGCAATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCCTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGCGTTCAATTATCTTCGCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATCAGCTGACAAACCGACTAGCGCAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGACAGGAACATGCGGTTGATAAAGTGGCGAAAGCCGTGAAAAG
AAGCAGAGCTGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGATGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCGCAGATAAAACGGTCAAGGTCGGCTTTCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTAAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGAATCATTAGACAGAGATG
ATTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTCCATGTCACA
AATGAAGCGAAAGAAAAAATCGCAGAGCTTGGATATCACCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (253-353)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-687)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (437-604)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	56.64	100	0.597
clpE	Streptococcus mutans UA159	56.199	100	0.596
clpE	Streptococcus pneumoniae Rx1	55.525	100	0.574
clpE	Streptococcus pneumoniae D39	55.525	100	0.574
clpE	Streptococcus pneumoniae R6	55.525	100	0.574
clpE	Streptococcus pneumoniae TIGR4	55.387	100	0.573
clpC	Bacillus subtilis subsp. subtilis str. 168	53.433	95.714	0.511
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.484	90.857	0.431
clpC	Streptococcus thermophilus LMD-9	45.975	92.286	0.424
clpC	Streptococcus thermophilus LMG 18311	45.82	92.286	0.423
clpC	Streptococcus pneumoniae TIGR4	44.513	92.429	0.411
clpC	Streptococcus pneumoniae Rx1	44.704	91.714	0.41
clpC	Streptococcus pneumoniae D39	44.704	91.714	0.41
clpC	Streptococcus mutans UA159	44.15	91.571	0.404