Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N8A73_RS05095 Genome accession   NZ_CP109651
Coordinates   1007901..1008479 (+) Length   192 a.a.
NCBI ID   WP_034282183.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1002901..1013479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS18860 - 1003396..1004007 (-) 612 WP_404841197.1 methyl-accepting chemotaxis protein -
  N8A73_RS18865 - 1004152..1004691 (-) 540 Protein_941 protoglobin family protein -
  N8A73_RS05080 - 1004784..1006316 (-) 1533 WP_254001639.1 FAD-dependent oxidoreductase -
  N8A73_RS05085 - 1006458..1007318 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  N8A73_RS05090 - 1007375..1007611 (-) 237 WP_254001640.1 IDEAL domain-containing protein -
  N8A73_RS05095 comK 1007901..1008479 (+) 579 WP_034282183.1 competence protein ComK Regulator
  N8A73_RS05100 - 1008778..1009260 (+) 483 WP_034282182.1 hypothetical protein -
  N8A73_RS05105 - 1009292..1010731 (-) 1440 WP_034282181.1 PLP-dependent aminotransferase family protein -
  N8A73_RS05110 - 1010877..1012046 (+) 1170 WP_034282180.1 MFS transporter -
  N8A73_RS05115 - 1012112..1012387 (+) 276 WP_041117044.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22322.36 Da        Isoelectric Point: 8.7962

>NTDB_id=748723 N8A73_RS05095 WP_034282183.1 1007901..1008479(+) (comK) [Bacillus safensis strain LG01]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNKY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=748723 N8A73_RS05095 WP_034282183.1 1007901..1008479(+) (comK) [Bacillus safensis strain LG01]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTTATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTTTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAACGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTCGATGGA
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAAGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGAAACAAATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615