Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   QAO39_RS00445 Genome accession   NZ_CP123158
Coordinates   84446..86551 (-) Length   701 a.a.
NCBI ID   WP_001058988.1    Uniprot ID   Q8NUR7
Organism   Staphylococcus aureus strain BE-MSSA9     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context


Location: 79446..91551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO39_RS00430 (QAO39_00425) - 81961..82188 (+) 228 WP_000932073.1 FeoA family protein -
  QAO39_RS00435 (QAO39_00430) feoB 82200..84194 (+) 1995 WP_165468821.1 ferrous iron transport protein B -
  QAO39_RS00440 (QAO39_00435) - 84207..84377 (+) 171 WP_000111118.1 FeoB-associated Cys-rich membrane protein -
  QAO39_RS00445 (QAO39_00440) clpE 84446..86551 (-) 2106 WP_001058988.1 ATP-dependent Clp protease ATP-binding subunit ClpL Regulator
  QAO39_RS00450 (QAO39_00445) - 86960..87481 (+) 522 WP_000455970.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QAO39_RS00455 (QAO39_00450) sey 87683..88348 (+) 666 WP_165468822.1 staphylococcal enterotoxin type Y -
  QAO39_RS00460 (QAO39_00455) - 88570..89736 (-) 1167 WP_000151982.1 hydroxymethylglutaryl-CoA synthase -
  QAO39_RS00465 (QAO39_00460) - 89990..91270 (+) 1281 WP_165468823.1 hydroxymethylglutaryl-CoA reductase, degradative -

Sequence


Protein


Download         Length: 701 a.a.        Molecular weight: 77836.22 Da        Isoelectric Point: 4.6056

>NTDB_id=748723 QAO39_RS00445 WP_001058988.1 84446..86551(-) (clpE) [Staphylococcus aureus strain BE-MSSA9]
MNNGFFNSDFDSIFRRMMQDMQGSNQVGNKKYYINGKEVSPEELAQLTQQGGNHSAEQSAQAFQQAAQRQQGQQGGNGNY
LEQIGRNLTQEARDGLLDPVIGRDKEIQETAEVLSRRTKNNPILVGEAGVGKTAIVEGLAQAIVEGNVPAAIKDKEIISV
DISSLEAGTQYRGAFEENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGLSDILKPALSRGEISIIGATTQDE
YRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLSIQYIPQRLLPDKAIDVLDITA
AHLSAQSPAVDKVETEKRISELENDKRKAVSAEEYKKADDIQNEIKSLQDKLENSNGEHTAVATVHDISDTIQRLTGIPV
SQMDDNDIERLKNISNRLRSKIIGQDQAVEMVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAIDLFGNKDA
LIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI
NFKNTIIICTSNAGFGNGNDAEEKDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDV
SQDAKDWLIEEGYDEELGARPLRRIVEQQVRDKITDYYLDHTDVKHVDIDVEDNELVVKGK

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=748723 QAO39_RS00445 WP_001058988.1 84446..86551(-) (clpE) [Staphylococcus aureus strain BE-MSSA9]
ATGAATAACGGTTTTTTCAATAGCGACTTTGATTCAATTTTTCGAAGAATGATGCAAGATATGCAAGGTTCAAATCAAGT
CGGAAACAAAAAGTACTATATTAATGGTAAAGAAGTTTCACCTGAAGAACTAGCGCAACTCACACAACAAGGTGGCAATC
ACTCTGCTGAACAAAGTGCGCAAGCTTTTCAACAAGCAGCACAAAGACAACAAGGGCAACAAGGTGGCAACGGCAATTAT
TTAGAACAAATTGGTCGTAACCTTACGCAAGAAGCACGTGACGGTTTATTAGATCCAGTCATTGGTCGTGATAAAGAAAT
TCAAGAAACTGCTGAAGTTTTAAGTAGACGAACTAAAAACAATCCTATATTAGTTGGAGAAGCTGGTGTTGGTAAAACTG
CGATTGTTGAAGGTTTAGCACAGGCAATCGTTGAAGGAAATGTACCAGCAGCAATCAAAGACAAAGAAATTATTTCTGTA
GACATTTCATCATTAGAAGCTGGAACGCAATATCGTGGTGCTTTTGAAGAAAATATTCAAAAATTAATCGAAGGTGTTAA
ATCTTCACAAAATGCCGTACTATTCTTTGATGAAATCCATCAAATTATCGGTTCAGGTGCCACAGGAAGTGATTCAGGTA
GCAAAGGGTTATCTGATATTTTGAAACCTGCATTAAGTCGTGGTGAGATTTCTATTATTGGTGCAACAACACAAGATGAA
TATCGAAACAATATTCTTAAAGATGCTGCATTAACGCGCAGATTTAATGAAGTGCTTGTTAATGAACCAAGCGCTAAAGA
TACTGTTGAAATTTTAAAAGGTATTCGCGAAAAATTCGAAGAACACCATCAAGTAAAATTACCAGATGACGTATTAAAAG
CATGTGTTGACTTATCAATTCAATATATTCCACAACGATTATTACCAGATAAAGCAATCGATGTGTTAGATATTACAGCA
GCACATTTATCTGCGCAAAGTCCAGCTGTCGATAAAGTTGAAACTGAAAAACGAATTTCTGAATTAGAAAATGATAAACG
TAAAGCGGTAAGTGCTGAAGAATATAAAAAAGCTGACGACATTCAAAATGAAATCAAATCATTACAAGATAAATTAGAAA
ATAGTAATGGTGAACATACTGCTGTTGCTACAGTTCATGATATTTCAGATACTATTCAACGATTAACTGGTATTCCAGTT
TCTCAAATGGATGATAACGATATTGAACGTTTAAAAAATATTTCTAATCGTTTAAGAAGTAAAATCATAGGTCAAGATCA
AGCTGTAGAAATGGTTTCACGTGCAATTCGCCGTAATCGTGCTGGGTTTGATGACGGCAACCGTCCAATTGGCAGTTTCC
TATTTGTTGGCCCTACTGGTGTTGGTAAAACAGAGCTTGCTAAACAATTAGCAATTGATCTATTTGGTAATAAAGATGCA
CTTATTCGACTTGATATGAGTGAATATAGTGACACAACAGCTGTTTCAAAAATGATTGGTACAACTGCTGGTTATGTCGG
TTATGATGATAATTCAAATACGTTAACTGAAAAAGTACGCCGTAATCCATACTCAGTCATTCTATTTGATGAAATCGAAA
AAGCAAATCCACAAATTTTAACATTGTTATTACAAGTAATGGATGATGGTAATTTGACTGATGGTCAAGGTAATGTCATC
AACTTTAAAAATACAATTATTATTTGTACATCAAATGCTGGCTTTGGCAATGGCAATGACGCTGAAGAAAAAGATATTAT
GCACGAAATGAAAAAATTCTTCCGCCCTGAATTCCTTAACCGCTTCAACGGCATCGTTGAATTCTTACATTTAGATAAAG
ATGCATTGCAAGATATCGTCAACTTATTATTAGACGATGTACAAGTTACATTAGATAAAAAAGGTATTACGATGGACGTT
TCTCAAGATGCGAAAGATTGGTTAATTGAAGAAGGCTATGATGAAGAATTAGGTGCACGTCCATTAAGACGTATTGTTGA
ACAGCAAGTACGTGACAAAATTACAGATTATTATCTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATA
ACGAATTAGTCGTAAAAGGTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8NUR7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

48.834

91.726

0.448

  clpE Streptococcus pneumoniae Rx1

48.298

88.017

0.425

  clpE Streptococcus pneumoniae D39

48.298

88.017

0.425

  clpE Streptococcus pneumoniae R6

48.298

88.017

0.425

  clpE Streptococcus pneumoniae TIGR4

48.298

88.017

0.425

  clpC Lactococcus lactis subsp. cremoris KW2

46.815

89.586

0.419

  clpC Bacillus subtilis subsp. subtilis str. 168

44.564

93.153

0.415

  clpC Streptococcus thermophilus LMD-9

44.392

90.3

0.401

  clpC Streptococcus thermophilus LMG 18311

44.076

90.3

0.398

  clpC Streptococcus pneumoniae TIGR4

44.175

88.16

0.389

  clpC Streptococcus pneumoniae Rx1

44.175

88.16

0.389

  clpC Streptococcus pneumoniae D39

44.175

88.16

0.389

  clpC Streptococcus mutans UA159

43.577

87.732

0.382

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.294

92.582

0.382