Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   OF800_RS09440 Genome accession   NZ_CP109636
Coordinates   1888642..1889685 (-) Length   347 a.a.
NCBI ID   WP_003133153.1    Uniprot ID   A0AA46TVQ7
Organism   Lactococcus garvieae strain Alexii-6_2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883642..1894685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF800_RS09425 (OF800_09425) rpsB 1883675..1884448 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  OF800_RS09430 (OF800_09430) - 1884721..1885761 (+) 1041 WP_014025490.1 lactonase family protein -
  OF800_RS09435 (OF800_09435) adhE 1885917..1888610 (+) 2694 WP_264308079.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  OF800_RS09440 (OF800_09440) sepM 1888642..1889685 (-) 1044 WP_003133153.1 SepM family pheromone-processing serine protease Regulator
  OF800_RS09445 (OF800_09445) coaD 1889675..1890172 (-) 498 WP_003133151.1 pantetheine-phosphate adenylyltransferase -
  OF800_RS09450 (OF800_09450) rsmD 1890162..1890701 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OF800_RS09455 (OF800_09455) - 1890796..1892142 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37816.10 Da        Isoelectric Point: 6.9825

>NTDB_id=748708 OF800_RS09440 WP_003133153.1 1888642..1889685(-) (sepM) [Lactococcus garvieae strain Alexii-6_2]
MKNEKIKKHKKLKLFFGIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDEVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=748708 OF800_RS09440 WP_003133153.1 1888642..1889685(-) (sepM) [Lactococcus garvieae strain Alexii-6_2]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGGTATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAATCAGATGGTAGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTACGGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACCAATCAGCAATTTGATTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAGAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGAGATGATTGACTATGTGTCTCAACAAAAAGTGGGAGATGAGGTGACTAT
CAAGTACACACGGGTGGATGGCAGCAACCATGAAGCCACAGGCAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GCATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACTTTGGAGATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGGAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGGCTTCTGGTACAACAAATAACTACACAGATGCACTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.568

100

0.496