Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OF800_RS08055 | Genome accession | NZ_CP109636 |
| Coordinates | 1602771..1605017 (-) | Length | 748 a.a. |
| NCBI ID | WP_003134200.1 | Uniprot ID | A0AA43PGJ7 |
| Organism | Lactococcus garvieae strain Alexii-6_2 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1597771..1610017
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OF800_RS08030 (OF800_08030) | - | 1598276..1598416 (+) | 141 | WP_264314027.1 | hypothetical protein | - |
| OF800_RS08035 (OF800_08035) | uvrB | 1598590..1600578 (-) | 1989 | WP_014025300.1 | excinuclease ABC subunit UvrB | - |
| OF800_RS08040 (OF800_08040) | - | 1600575..1601030 (-) | 456 | WP_003134193.1 | RNA pyrophosphohydrolase | - |
| OF800_RS08045 (OF800_08045) | def | 1601135..1601761 (+) | 627 | WP_264307979.1 | peptide deformylase | - |
| OF800_RS08050 (OF800_08050) | yqeK | 1602125..1602715 (-) | 591 | Protein_1583 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| OF800_RS08055 (OF800_08055) | clpC | 1602771..1605017 (-) | 2247 | WP_003134200.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OF800_RS08060 (OF800_08060) | rpoD | 1605238..1606464 (-) | 1227 | WP_308203563.1 | RNA polymerase sigma factor RpoD | - |
| OF800_RS10630 | - | 1606525..1606635 (-) | 111 | Protein_1586 | translation initiation factor IF-2 N-terminal domain-containing protein | - |
| OF800_RS08065 (OF800_08065) | dnaG | 1606656..1608542 (-) | 1887 | WP_264307980.1 | DNA primase | - |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83398.40 Da Isoelectric Point: 4.7434
>NTDB_id=748699 OF800_RS08055 WP_003134200.1 1602771..1605017(-) (clpC) [Lactococcus garvieae strain Alexii-6_2]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=748699 OF800_RS08055 WP_003134200.1 1602771..1605017(-) (clpC) [Lactococcus garvieae strain Alexii-6_2]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAGAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCCGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTAGCCCAAAAAATCGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGACG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCTGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAACCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGTTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGCTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCCGGTC
AATTGACAGAACGTGTACGTCGTAATCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCAATTGCTGATTTTTATATTGAACATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAGAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCCGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTAGCCCAAAAAATCGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
TCTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGACG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATCCTTAAACCGGCTTTAGCACGTGGCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCTGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAACCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGTTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGCTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCCGGTC
AATTGACAGAACGTGTACGTCGTAATCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCAATTGCTGATTTTTATATTGAACATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.81 |
99.332 |
0.862 |
| clpE | Streptococcus mutans UA159 |
76.821 |
100 |
0.775 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae Rx1 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae D39 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae R6 |
77.565 |
97.727 |
0.758 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
53.13 |
83.289 |
0.443 |
| clpC | Streptococcus pneumoniae D39 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae Rx1 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.034 |
85.963 |
0.396 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.798 |
81.952 |
0.392 |
| clpC | Streptococcus mutans UA159 |
46.688 |
82.754 |
0.386 |
| clpC | Streptococcus thermophilus LMD-9 |
45.847 |
83.69 |
0.384 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.484 |
82.888 |
0.377 |