Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QAO56_RS03860 Genome accession   NZ_CP123156
Coordinates   806546..807628 (+) Length   360 a.a.
NCBI ID   WP_001622509.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MRSA16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 801546..812628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO56_RS03840 (QAO56_03825) gdpS 801915..802985 (-) 1071 WP_000460988.1 GGDEF domain-containing protein GdpS -
  QAO56_RS03845 (QAO56_03830) - 803303..804358 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  QAO56_RS03850 (QAO56_03835) - 804530..805171 (-) 642 WP_000192949.1 YigZ family protein -
  QAO56_RS03855 (QAO56_03840) fakB1 805315..806181 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  QAO56_RS03860 (QAO56_03845) comFA 806546..807628 (+) 1083 WP_001622509.1 DEAD/DEAH box helicase Machinery gene
  QAO56_RS03865 (QAO56_03850) - 807621..808295 (+) 675 WP_001057970.1 ComF family protein -
  QAO56_RS03870 (QAO56_03855) hpf 808356..808928 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QAO56_RS03875 (QAO56_03860) secA 809343..811874 (+) 2532 WP_000506533.1 preprotein translocase subunit SecA -
  QAO56_RS03880 (QAO56_03865) - 811916..812009 (+) 94 Protein_752 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41991.47 Da        Isoelectric Point: 9.5935

>NTDB_id=748649 QAO56_RS03860 WP_001622509.1 806546..807628(+) (comFA) [Staphylococcus aureus strain GE-MRSA16]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=748649 QAO56_RS03860 WP_001622509.1 806546..807628(+) (comFA) [Staphylococcus aureus strain GE-MRSA16]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367