Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OE059_RS06290 Genome accession   NZ_CP109617
Coordinates   1194634..1196331 (+) Length   565 a.a.
NCBI ID   WP_275060540.1    Uniprot ID   -
Organism   Exiguobacterium profundum strain TSS-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1189634..1201331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE059_RS06265 (OE059_06270) xseB 1190078..1190302 (+) 225 WP_012726571.1 exodeoxyribonuclease VII small subunit -
  OE059_RS06270 (OE059_06275) - 1190299..1191177 (+) 879 WP_214684035.1 polyprenyl synthetase family protein -
  OE059_RS06275 (OE059_06280) dxs 1191301..1193193 (+) 1893 WP_270810714.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OE059_RS06280 (OE059_06285) - 1193200..1194015 (+) 816 WP_012726568.1 TlyA family RNA methyltransferase -
  OE059_RS06285 (OE059_06290) ahrC 1194171..1194620 (+) 450 WP_012726567.1 transcriptional regulator AhrC/ArgR -
  OE059_RS06290 (OE059_06295) recN 1194634..1196331 (+) 1698 WP_275060540.1 DNA repair protein RecN Machinery gene
  OE059_RS06295 (OE059_06300) spo0A 1196332..1197063 (+) 732 WP_074036711.1 sporulation transcription factor Spo0A -
  OE059_RS06300 (OE059_06305) - 1197721..1197969 (-) 249 WP_031423346.1 DUF2627 domain-containing protein -
  OE059_RS06305 (OE059_06310) - 1198103..1199740 (+) 1638 WP_078147100.1 sigma 54-interacting transcriptional regulator -
  OE059_RS06310 (OE059_06315) yqiS 1199862..1200758 (+) 897 WP_214684039.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63624.28 Da        Isoelectric Point: 4.7012

>NTDB_id=748606 OE059_RS06290 WP_275060540.1 1194634..1196331(+) (recN) [Exiguobacterium profundum strain TSS-3]
MLAELSIKQFAIIDELNIPFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFMIEPDHPVIEAA
EQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMPLSTLREFGRLLVDIHGQHEHQHLMDAEFHLGILDHFAEKEISPLVE
EYQTAFAAWKQVADELKRLSQSEQELAQRMDLLSFQTKEIEAAELKVGEEQALTEERNELANFERIHQHIRLSYEAVAEE
SNGLDQIGVAMREMEEASQLSSSLTSVSETISNAYYLLEDAKFQLRDQLDSLEFDPIRLDEIESRLALFQQLKRKYGTTI
EEVITYGEQVSDELKSMTNREEHLQTLSDELIRLEQIAREAGMRLSSARKMAAESLQHAIHRELKELYMEKTAFEVRFKT
TSLKQDGLDDVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETNERTKTNVTSLDRESRIDELGRMIAGAQMTDLTKQHVEELLEMSQQVKQKF
IKGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=748606 OE059_RS06290 WP_275060540.1 1194634..1196331(+) (recN) [Exiguobacterium profundum strain TSS-3]
ATGTTAGCAGAACTATCAATCAAACAGTTTGCGATTATTGACGAATTAAACATTCCGTTTAATCGAGGTATGACTGTGCT
CACGGGTGAGACAGGTGCCGGTAAATCGATCTTGTTGGATGCGATTGGATTGCTTGTTGGAGGACGTGGCTCAAGTGAGT
TCGTGCGATATGGTCAAGATAAAGCTGAAATCGAAGGTCTGTTCATGATTGAACCGGATCACCCGGTCATCGAAGCGGCC
GAACAATATGGCATCGATGTTGAAGATGGGACAGTCATCTTACGTCGAGACCTACATAGTAGCGGGAAGAGCGTCTGCCG
TGTGAACGGGAAAATGATGCCGCTCTCGACGCTACGGGAGTTCGGACGGCTACTGGTCGATATTCACGGTCAACATGAAC
ATCAACATTTAATGGATGCGGAATTTCACCTTGGCATATTAGACCATTTCGCCGAAAAAGAAATCAGTCCGTTAGTCGAG
GAATATCAAACGGCATTTGCGGCCTGGAAACAAGTCGCCGATGAATTGAAGCGTCTTAGTCAAAGTGAGCAGGAGCTTGC
TCAACGAATGGATCTTTTGTCGTTTCAAACGAAAGAAATCGAAGCGGCTGAATTAAAAGTTGGGGAAGAACAGGCGTTGA
CAGAAGAACGGAATGAATTGGCCAACTTTGAACGCATTCATCAACACATTCGTCTCTCGTATGAGGCGGTTGCCGAGGAG
TCAAATGGACTCGATCAAATCGGAGTGGCGATGCGCGAGATGGAAGAGGCGTCACAGCTCTCTTCGTCTTTGACATCTGT
ATCGGAGACAATCTCTAACGCTTATTATTTGTTGGAGGATGCAAAGTTTCAACTCCGGGACCAGTTAGATTCGCTCGAAT
TTGACCCGATTCGATTGGATGAGATTGAGTCACGATTGGCTCTTTTCCAGCAATTGAAACGAAAGTATGGGACGACCATC
GAAGAAGTCATCACCTATGGCGAACAAGTGTCGGATGAATTGAAGTCGATGACGAACCGGGAAGAGCATTTACAAACGCT
CTCAGATGAACTCATTCGATTAGAGCAAATTGCAAGAGAAGCTGGCATGAGACTGTCTTCAGCGCGTAAGATGGCTGCGG
AGTCGCTTCAGCATGCGATTCATCGAGAGTTGAAAGAACTATATATGGAAAAAACAGCGTTCGAGGTCCGTTTTAAAACC
ACATCGCTTAAACAAGATGGTTTAGATGACGTAGAGTTTTACATGATGACGAACGTTGGAGAACCGTTCAAACCGCTCGC
AAAAGTCGCTTCAGGAGGAGAGCTTTCCCGTGTCATGCTCGCACTCAAATCAATCTTTTCAAGAACGGTTGGAGTGGCCT
CCATTATTTTTGACGAGGTCGACACAGGGGTCTCTGGACGTGTCGCGCAGGCGATGGGTGAAAAAATCTTCCGACTTTCT
GTCGGCTCTCAAGTCCTCTGTATCACGCACTTGGCACAAGTTGCTGCGATGGCAGACCAACATCTTTACATTACGAAAAC
CGAAACGAATGAACGGACGAAAACAAATGTGACGTCCCTCGACCGTGAAAGTCGAATCGACGAATTGGGTCGCATGATTG
CTGGCGCTCAAATGACAGACTTGACGAAGCAACACGTCGAAGAATTACTTGAGATGTCACAACAAGTAAAACAGAAGTTC
ATCAAAGGAGTGTCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.181

100

0.55