Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OE059_RS00500 Genome accession   NZ_CP109617
Coordinates   96955..98331 (+) Length   458 a.a.
NCBI ID   WP_012727704.1    Uniprot ID   A0A653USY8
Organism   Exiguobacterium profundum strain TSS-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 91955..103331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE059_RS00480 (OE059_00480) - 92479..92955 (+) 477 WP_012727708.1 CtsR family transcriptional regulator -
  OE059_RS00485 (OE059_00485) - 92961..93395 (+) 435 WP_214758705.1 UvrB/UvrC motif-containing protein -
  OE059_RS00490 (OE059_00490) - 93395..94438 (+) 1044 WP_214758703.1 protein arginine kinase -
  OE059_RS00495 (OE059_00495) - 94463..96898 (+) 2436 WP_078147873.1 ATP-dependent Clp protease ATP-binding subunit -
  OE059_RS00500 (OE059_00500) radA 96955..98331 (+) 1377 WP_012727704.1 DNA repair protein RadA Machinery gene
  OE059_RS00505 (OE059_00505) - 98446..99510 (+) 1065 WP_078147872.1 PIN/TRAM domain-containing protein -
  OE059_RS00510 (OE059_00510) ispD 99566..100246 (+) 681 WP_214689596.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OE059_RS00515 (OE059_00515) ispF 100243..100716 (+) 474 WP_012727701.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OE059_RS00520 (OE059_00520) gltX 100762..102219 (+) 1458 WP_193343265.1 glutamate--tRNA ligase -
  OE059_RS00525 (OE059_00525) cysE 102478..103167 (+) 690 WP_012727699.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49845.46 Da        Isoelectric Point: 6.8954

>NTDB_id=748595 OE059_RS00500 WP_012727704.1 96955..98331(+) (radA) [Exiguobacterium profundum strain TSS-3]
MAKIKTKYVCQSCGYESAKWMGRCPGCNEWNTLVEEFVEEKKAKRGAAFVHSSSRQLKPERLANVVSQEETRVHTNSREF
DRVLGGGIVPGSLVLVGGDPGIGKSTILLQVSAHLAHSGKKVLYISGEESLKQTKLRAERLGLPTDDLFVLAETDMLMIE
RVIDEEQPGFVIIDSIQTVYMDEIQSAPGSVSQVRECTAALMKIAKTRGIAVFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMKESGLEEVLNPSEIFLEERTAGVSGSTVVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNRVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICISIASSFRDRPTRPTDVCIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNMGGWTAPAGIEVVGVGTVDEALQLAIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=748595 OE059_RS00500 WP_012727704.1 96955..98331(+) (radA) [Exiguobacterium profundum strain TSS-3]
ATGGCCAAAATTAAAACGAAATACGTCTGCCAATCGTGCGGATATGAATCAGCCAAGTGGATGGGACGCTGTCCGGGTTG
TAATGAATGGAATACGCTCGTCGAAGAGTTTGTAGAAGAGAAGAAGGCCAAACGTGGAGCGGCCTTTGTGCATAGTTCAT
CGCGACAATTGAAACCGGAACGTTTAGCAAACGTCGTCTCACAAGAAGAGACGCGTGTGCATACGAATAGCCGTGAATTT
GACCGCGTGCTCGGTGGAGGAATTGTCCCAGGTTCACTCGTCTTAGTCGGAGGGGACCCAGGGATTGGGAAATCAACAAT
CTTGCTACAGGTCAGCGCTCACTTAGCCCATAGTGGTAAAAAGGTGCTGTACATCTCGGGAGAGGAATCGCTCAAACAGA
CGAAACTGCGTGCGGAACGGCTCGGCTTACCAACGGATGACTTGTTCGTACTCGCTGAGACGGACATGTTGATGATTGAA
CGGGTTATTGATGAGGAGCAACCCGGATTTGTCATCATTGACTCGATTCAAACGGTATACATGGATGAGATTCAATCAGC
GCCAGGGAGCGTGTCGCAAGTTCGAGAATGTACGGCCGCCCTCATGAAAATTGCGAAAACGCGAGGGATCGCCGTCTTCA
TCGTCGGTCACGTGACGAAGCAAGGATCGATTGCTGGTCCTCGTTTACTCGAGCATATGGTCGATGCGGTACTTTACTTT
GAAGGGGAACGTCATCATACGTTCCGTATTTTACGGGCGGTGAAAAACCGTTTTGGGTCGACGAACGAGATTGGCATTTT
CGAGATGAAAGAGAGCGGGCTTGAGGAAGTGCTCAATCCGTCCGAAATATTCTTAGAGGAGCGCACCGCGGGCGTGTCAG
GCTCGACCGTCGTTGCCTCAATGGAAGGGACACGGACGGTACTCGTGGAACTCCAAGCACTCATCTCTCCGACATCGTTC
GGGAACCCGAGACGTATGGCAACGGGCATCGATCAAAACCGAGTCGCGCTTCTCATGGCCGTTCTTGAGAAACGTTCCGG
TCTCTTGCTTCAGACGCAGGATGCGTACTTGAAAGCAGCCGGTGGCGTCAAACTGGACGAGCCGGCGATTGACCTTGCGA
TTTGTATCTCGATCGCCTCGAGTTTCCGCGATCGTCCGACCCGTCCGACGGATGTCTGCATCGGTGAGGTCGGATTGACC
GGGGAAGTGCGACGGGTTTCAAGAATCGAGCAACGTGTCGCCGAGGCGGCGAAACTAGGTTTTACACGGGCCATCATCCC
GAAAAATAACATGGGGGGATGGACCGCTCCGGCAGGGATTGAAGTCGTCGGGGTCGGGACAGTGGACGAAGCACTCCAGT
TGGCGATTCCGTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(71-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653USY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.684

99.563

0.734
  radA Streptococcus mitis SK321

61.81

98.908

0.611
  radA Streptococcus mitis NCTC 12261

61.81

98.908

0.611
  radA Streptococcus pneumoniae Rx1

61.81

98.908

0.611
  radA Streptococcus pneumoniae D39

61.81

98.908

0.611
  radA Streptococcus pneumoniae R6

61.81

98.908

0.611
  radA Streptococcus pneumoniae TIGR4

61.81

98.908

0.611