Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   OGV21_RS26505 Genome accession   NZ_CP109606
Coordinates   5828409..5828810 (-) Length   133 a.a.
NCBI ID   WP_012274552.1    Uniprot ID   A0A7Y3UUX4
Organism   Pseudomonas putida strain QH1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5823409..5833810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV21_RS26490 - 5825373..5827397 (-) 2025 WP_223296421.1 methyl-accepting chemotaxis protein -
  OGV21_RS26495 - 5827445..5827999 (-) 555 WP_012274550.1 chemotaxis protein CheW -
  OGV21_RS26500 pilH 5827996..5828361 (-) 366 WP_012274551.1 twitching motility response regulator PilH -
  OGV21_RS26505 pilG 5828409..5828810 (-) 402 WP_012274552.1 response regulator Regulator
  OGV21_RS26510 gshB 5828965..5829918 (+) 954 WP_060494475.1 glutathione synthase -
  OGV21_RS26515 - 5830010..5830915 (+) 906 WP_060494474.1 energy transducer TonB -
  OGV21_RS26520 - 5831082..5831651 (+) 570 WP_012274555.1 YqgE/AlgH family protein -
  OGV21_RS26525 ruvX 5831651..5832076 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  OGV21_RS26530 pyrR 5832126..5832644 (+) 519 WP_012274556.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  OGV21_RS26535 - 5832657..5833661 (+) 1005 WP_008099987.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14658.96 Da        Isoelectric Point: 6.4772

>NTDB_id=748451 OGV21_RS26505 WP_012274552.1 5828409..5828810(-) (pilG) [Pseudomonas putida strain QH1]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSVFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFAVPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=748451 OGV21_RS26505 WP_012274552.1 5828409..5828810(-) (pilG) [Pseudomonas putida strain QH1]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCACAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTGATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCACCAGCCCAGCATCATTTTCG
TCGATGTGCTGATGCCGCGCCTGGACGGTTACCAGACCTGCGCGGTCATCAAGCACAACAGTGTCTTCAAGGACACCCCG
GTGATCCTGCTGTCGTCGCGCGACGGCCTGTTCGACAAGGCTCGTGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
GCCGTTCAGCAAGGAAGAATTGCTCGACGCGATCCGCGCCCACGTGCCCGGGTTTGCCGTACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y3UUX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632