Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   F6Y14_RS02510 Genome accession   NZ_AP020322
Coordinates   456453..456899 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KUH180129     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451453..461899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y14_RS02475 - 451947..452150 (+) 204 WP_000087561.1 YqgQ family protein -
  F6Y14_RS02480 (KUH180129_0455) - 452147..453133 (+) 987 WP_000161311.1 ROK family glucokinase -
  F6Y14_RS02485 (KUH180129_0456) - 453133..453462 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  F6Y14_RS02490 (KUH180129_0457) - 453459..454082 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  F6Y14_RS02495 (KUH180129_0458) comGA 454134..455108 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  F6Y14_RS02500 (KUH180129_0459) comGB 455080..456150 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  F6Y14_RS02505 (KUH180129_0460) comGC 456164..456475 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  F6Y14_RS02510 (KUH180129_0461) comGD 456453..456899 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  F6Y14_RS02515 (KUH180129_0462) comGE 456886..457185 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  F6Y14_RS02520 (KUH180129_0463) comGF 457103..457600 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  F6Y14_RS02525 - 457697..457843 (+) 147 WP_001792109.1 hypothetical protein -
  F6Y14_RS02530 (KUH180129_0464) - 457833..458357 (+) 525 WP_001015120.1 shikimate kinase -
  F6Y14_RS02535 (KUH180129_0465) gcvT 458516..459607 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  F6Y14_RS02540 (KUH180129_0466) gcvPA 459627..460973 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=74800 F6Y14_RS02510 WP_001788899.1 456453..456899(+) (comGD) [Staphylococcus aureus strain KUH180129]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=74800 F6Y14_RS02510 WP_001788899.1 456453..456899(+) (comGD) [Staphylococcus aureus strain KUH180129]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment