Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   F6Y17_RS14645 Genome accession   NZ_AP020320
Coordinates   2888426..2889142 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain KUH180062     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883426..2894142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y17_RS14625 (KUH180062_2722) - 2884518..2885468 (+) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -
  F6Y17_RS14630 (KUH180062_2723) - 2885617..2887101 (+) 1485 WP_000141432.1 sucrose-6-phosphate hydrolase -
  F6Y17_RS14635 (KUH180062_2724) - 2887098..2888057 (+) 960 WP_001253312.1 carbohydrate kinase family protein -
  F6Y17_RS14640 - 2888245..2888354 (-) 110 Protein_2800 hypothetical protein -
  F6Y17_RS14645 (KUH180062_2725) agrA 2888426..2889142 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  F6Y17_RS14650 (KUH180062_2726) agrC 2889161..2890444 (-) 1284 WP_000447888.1 quorum-sensing sensor histidine kinase AgrC -
  F6Y17_RS14655 (KUH180062_2727) agrD 2890474..2890617 (-) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  F6Y17_RS14660 (KUH180062_2728) - 2890620..2891183 (-) 564 WP_001105696.1 accessory gene regulator AgrB -
  F6Y17_RS15480 hld 2891473..2891553 (+) 81 WP_000046022.1 delta-hemolysin -
  F6Y17_RS14670 (KUH180062_2730) - 2892153..2892938 (-) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  F6Y17_RS14675 (KUH180062_2731) - 2893299..2893925 (-) 627 WP_000522381.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=74784 F6Y17_RS14645 WP_000688492.1 2888426..2889142(-) (agrA) [Staphylococcus aureus strain KUH180062]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=74784 F6Y17_RS14645 WP_000688492.1 2888426..2889142(-) (agrA) [Staphylococcus aureus strain KUH180062]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment