Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QAY78_RS09885 Genome accession   NZ_CP123128
Coordinates   1975534..1975911 (-) Length   125 a.a.
NCBI ID   WP_001621795.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GE-MSSA31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970534..1980911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY78_RS09860 (QAY78_09860) - 1970914..1971900 (+) 987 WP_000662031.1 tRNA dihydrouridine synthase -
  QAY78_RS09865 (QAY78_09865) - 1971961..1972533 (-) 573 WP_411896702.1 TetR/AcrR family transcriptional regulator -
  QAY78_RS09870 (QAY78_09870) - 1972681..1974198 (+) 1518 WP_000107171.1 MDR family MFS transporter -
  QAY78_RS09875 (QAY78_09875) - 1974200..1974757 (+) 558 WP_000633423.1 DUF4811 domain-containing protein -
  QAY78_RS09880 (QAY78_09880) - 1974999..1975472 (-) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  QAY78_RS09885 (QAY78_09885) lrpC 1975534..1975911 (-) 378 WP_001621795.1 Lrp/AsnC family transcriptional regulator Machinery gene
  QAY78_RS09890 (QAY78_09890) - 1976031..1976978 (+) 948 Protein_1911 IS30 family transposase -
  QAY78_RS09895 (QAY78_09895) - 1976970..1977245 (-) 276 WP_072468794.1 site-specific DNA-methyltransferase -
  QAY78_RS09900 (QAY78_09900) - 1977884..1979803 (-) 1920 WP_000632676.1 DNA/RNA helicase domain-containing protein -
  QAY78_RS09905 (QAY78_09905) - 1980278..1980472 (+) 195 WP_000953270.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14603.72 Da        Isoelectric Point: 4.7711

>NTDB_id=747732 QAY78_RS09885 WP_001621795.1 1975534..1975911(-) (lrpC) [Staphylococcus aureus strain GE-MSSA31]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=747732 QAY78_RS09885 WP_001621795.1 1975534..1975911(-) (lrpC) [Staphylococcus aureus strain GE-MSSA31]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAACATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416