Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   F6Y16_RS10105 Genome accession   NZ_AP020318
Coordinates   2006825..2008453 (+) Length   542 a.a.
NCBI ID   WP_108932401.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KUH180038     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 1998603..2015218 2006825..2008453 within 0


Gene organization within MGE regions


Location: 1998603..2015218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y16_RS10070 (KUH180038_1874) - 1998603..1999100 (-) 498 WP_000051479.1 hypothetical protein -
  F6Y16_RS10075 (KUH180038_1875) - 1999569..1999946 (-) 378 WP_000687965.1 hypothetical protein -
  F6Y16_RS10080 (KUH180038_1876) - 2000372..2001304 (-) 933 WP_000364405.1 hypothetical protein -
  F6Y16_RS10085 (KUH180038_1877) - 2001376..2002959 (-) 1584 WP_001551935.1 hypothetical protein -
  F6Y16_RS10090 (KUH180038_1878) ssb 2003131..2003427 (+) 297 WP_000221967.1 cassette chromosome ssDNA-binding protein -
  F6Y16_RS10095 (KUH180038_1879) cch1 2003427..2005220 (+) 1794 WP_108932402.1 cassette chromosome replicative helicase -
  F6Y16_RS10100 (KUH180038_1880) ccrA 2005454..2006803 (+) 1350 WP_000815640.1 cassette chromosome recombinase CcrA Machinery gene
  F6Y16_RS10105 (KUH180038_1881) ccrB 2006825..2008453 (+) 1629 WP_108932401.1 cassette chromosome recombinase CcrB Machinery gene
  F6Y16_RS10110 (KUH180038_1882) - 2008975..2009325 (+) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  F6Y16_RS10120 (KUH180038_1884) - 2009412..2009723 (+) 312 WP_000700851.1 DUF960 family protein -
  F6Y16_RS10125 (KUH180038_1885) - 2009738..2010244 (+) 507 WP_001092189.1 DUF1643 domain-containing protein -
  F6Y16_RS10130 (KUH180038_1886) - 2010293..2011903 (+) 1611 Protein_1914 IS1182 family transposase -
  F6Y16_RS10135 (KUH180038_1887) - 2011894..2012136 (-) 243 Protein_1915 type I restriction enzyme endonuclease domain-containing protein -
  F6Y16_RS10140 (KUH180038_1888) - 2012126..2013112 (-) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  F6Y16_RS10145 (KUH180038_1889) mecA 2013209..2015218 (+) 2010 WP_001801873.1 PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62654.83 Da        Isoelectric Point: 9.7970

>NTDB_id=74732 F6Y16_RS10105 WP_108932401.1 2006825..2008453(+) (ccrB) [Staphylococcus aureus strain KUH180038]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=74732 F6Y16_RS10105 WP_108932401.1 2006825..2008453(+) (ccrB) [Staphylococcus aureus strain KUH180038]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACTCTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAACTAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGATTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

99.077

100

0.991

Multiple sequence alignment