Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QAO34_RS03250 Genome accession   NZ_CP123112
Coordinates   586967..587593 (-) Length   208 a.a.
NCBI ID   WP_041494733.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA46     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 581967..592593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO34_RS03230 (QAO34_03205) - 582588..583274 (+) 687 WP_000362222.1 DnaD domain-containing protein -
  QAO34_RS03235 (QAO34_03210) nth 583264..583923 (+) 660 WP_000253765.1 endonuclease III -
  QAO34_RS03240 (QAO34_03215) - 583928..584269 (+) 342 WP_000182028.1 YpoC family protein -
  QAO34_RS03245 (QAO34_03220) - 584787..586970 (-) 2184 WP_050958638.1 transglycosylase domain-containing protein -
  QAO34_RS03250 (QAO34_03225) recU 586967..587593 (-) 627 WP_041494733.1 Holliday junction resolvase RecU Machinery gene
  QAO34_RS03255 (QAO34_03230) - 588132..588482 (+) 351 WP_001000805.1 YppE family protein -
  QAO34_RS03260 (QAO34_03235) - 588475..589038 (+) 564 WP_000241302.1 DUF1273 domain-containing protein -
  QAO34_RS03265 (QAO34_03240) gpsB 589052..589396 (+) 345 WP_001286320.1 cell division regulator GpsB -
  QAO34_RS03275 (QAO34_03250) - 590047..591192 (+) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  QAO34_RS03280 (QAO34_03255) - 591276..591608 (+) 333 WP_000516801.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24499.88 Da        Isoelectric Point: 9.6232

>NTDB_id=747162 QAO34_RS03250 WP_041494733.1 586967..587593(-) (recU) [Staphylococcus aureus strain IT-MSSA46]
MNYPNGKPYRKNSAIDGEKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=747162 QAO34_RS03250 WP_041494733.1 586967..587593(-) (recU) [Staphylococcus aureus strain IT-MSSA46]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGAGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCGGTACAAATAGTTAATGTCAACTATCCCAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGATCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529