Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QAO38_RS06550 Genome accession   NZ_CP123110
Coordinates   1288710..1289792 (-) Length   360 a.a.
NCBI ID   WP_411897061.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA47     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283710..1294792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO38_RS06530 (QAO38_06510) - 1284324..1284422 (-) 99 WP_031789464.1 hypothetical protein -
  QAO38_RS06535 (QAO38_06515) secA 1284464..1286995 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  QAO38_RS06540 (QAO38_06520) hpf 1287410..1287982 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QAO38_RS06545 (QAO38_06525) - 1288043..1288717 (-) 675 WP_001057974.1 ComF family protein -
  QAO38_RS06550 (QAO38_06530) comFA 1288710..1289792 (-) 1083 WP_411897061.1 DEAD/DEAH box helicase family protein Machinery gene
  QAO38_RS06555 (QAO38_06535) fakB1 1290156..1291022 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  QAO38_RS06560 (QAO38_06540) - 1291166..1291807 (+) 642 WP_000192942.1 YigZ family protein -
  QAO38_RS06565 (QAO38_06545) - 1291971..1293026 (-) 1056 WP_000258149.1 glycosyltransferase family 4 protein -
  QAO38_RS06570 (QAO38_06550) gdpS 1293344..1294414 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42038.57 Da        Isoelectric Point: 9.7563

>NTDB_id=747103 QAO38_RS06550 WP_411897061.1 1288710..1289792(-) (comFA) [Staphylococcus aureus strain IT-MSSA47]
MDNVTRYKITESSQSSSQVYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENVIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=747103 QAO38_RS06550 WP_411897061.1 1288710..1289792(-) (comFA) [Staphylococcus aureus strain IT-MSSA47]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGTCTATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATGTAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTCAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTTGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTGGTTGTTATCGATGCGCATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369