Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QAO20_RS04300 Genome accession   NZ_CP123106
Coordinates   886350..887321 (-) Length   323 a.a.
NCBI ID   WP_000876312.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881350..892321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS04275 (QAO20_04265) murB 881937..882860 (+) 924 WP_000608443.1 UDP-N-acetylmuramate dehydrogenase -
  QAO20_RS04280 (QAO20_04270) - 882878..883192 (+) 315 WP_111065352.1 CHY zinc finger protein -
  QAO20_RS04285 (QAO20_04275) - 883509..884537 (-) 1029 WP_000754456.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  QAO20_RS04290 (QAO20_04280) - 884652..885413 (-) 762 WP_000573581.1 ABC transporter ATP-binding protein -
  QAO20_RS04295 (QAO20_04285) - 885410..886366 (-) 957 WP_025173898.1 iron chelate uptake ABC transporter family permease subunit -
  QAO20_RS04300 (QAO20_04290) ceuB 886350..887321 (-) 972 WP_000876312.1 ABC transporter permease Machinery gene
  QAO20_RS04305 - 887405..887488 (-) 84 Protein_855 hypothetical protein -
  QAO20_RS04310 (QAO20_04295) nrdF 887697..888668 (-) 972 WP_000562497.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QAO20_RS04315 (QAO20_04300) nrdE 888786..890891 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QAO20_RS04320 (QAO20_04305) nrdI 890854..891252 (-) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=746909 QAO20_RS04300 WP_000876312.1 886350..887321(-) (ceuB) [Staphylococcus aureus strain IT-MSSA50]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=746909 QAO20_RS04300 WP_000876312.1 886350..887321(-) (ceuB) [Staphylococcus aureus strain IT-MSSA50]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGTTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAACAAAATATATTGTTCTCAAGTCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACCGGTCACATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATTAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCAGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATCGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471