Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QAO20_RS04140 Genome accession   NZ_CP123106
Coordinates   856321..857403 (-) Length   360 a.a.
NCBI ID   WP_001798444.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA50     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 851321..862403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO20_RS04120 (QAO20_04110) - 851945..852034 (-) 90 WP_042899954.1 hypothetical protein -
  QAO20_RS04125 (QAO20_04115) secA 852076..854607 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  QAO20_RS04130 (QAO20_04120) hpf 855021..855593 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QAO20_RS04135 (QAO20_04125) - 855654..856328 (-) 675 WP_001057976.1 ComF family protein -
  QAO20_RS04140 (QAO20_04130) comFA 856321..857403 (-) 1083 WP_001798444.1 DEAD/DEAH box helicase Machinery gene
  QAO20_RS04145 (QAO20_04135) fakB1 857767..858633 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  QAO20_RS04150 (QAO20_04140) - 858777..859418 (+) 642 WP_000192947.1 YigZ family protein -
  QAO20_RS04155 (QAO20_04145) - 859590..860645 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  QAO20_RS04160 (QAO20_04150) gdpS 860963..862033 (+) 1071 WP_111065205.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42019.48 Da        Isoelectric Point: 9.6803

>NTDB_id=746908 QAO20_RS04140 WP_001798444.1 856321..857403(-) (comFA) [Staphylococcus aureus strain IT-MSSA50]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=746908 QAO20_RS04140 WP_001798444.1 856321..857403(-) (comFA) [Staphylococcus aureus strain IT-MSSA50]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCCTATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAAA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGAAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367