Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   F6Y18_RS05185 Genome accession   NZ_AP020316
Coordinates   1016237..1016806 (+) Length   189 a.a.
NCBI ID   WP_064130007.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KUH140331     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011237..1021806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6Y18_RS05150 - 1012448..1012720 (-) 273 WP_072470685.1 lactococcin 972 family bacteriocin -
  F6Y18_RS05155 - 1012730..1012831 (-) 102 WP_001790623.1 hypothetical protein -
  F6Y18_RS14130 - 1013370..1013447 (-) 78 WP_099112139.1 putative holin-like toxin -
  F6Y18_RS05165 (KUH140331_0952) - 1013750..1014352 (-) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  F6Y18_RS05170 (KUH140331_0953) - 1014367..1014543 (-) 177 WP_000214898.1 YkvS family protein -
  F6Y18_RS05175 (KUH140331_0954) - 1014742..1015728 (+) 987 WP_000668815.1 lipoate--protein ligase -
  F6Y18_RS05180 (KUH140331_0955) - 1015809..1016027 (-) 219 WP_150030456.1 IDEAL domain-containing protein -
  F6Y18_RS05185 (KUH140331_0956) comK/comK1 1016237..1016806 (+) 570 WP_064130007.1 competence protein ComK Regulator
  F6Y18_RS05200 (KUH140331_0959) - 1017293..1018804 (-) 1512 WP_031866180.1 bifunctional metallophosphatase/5'-nucleotidase -
  F6Y18_RS05205 (KUH140331_0960) - 1018943..1020301 (-) 1359 WP_000021865.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22574.80 Da        Isoelectric Point: 9.6091

>NTDB_id=74679 F6Y18_RS05185 WP_064130007.1 1016237..1016806(+) (comK/comK1) [Staphylococcus aureus strain KUH140331]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYSNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=74679 F6Y18_RS05185 WP_064130007.1 1016237..1016806(+) (comK/comK1) [Staphylococcus aureus strain KUH140331]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAGCAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment