Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | F6Y13_RS14205 | Genome accession | NZ_AP020311 |
| Coordinates | 2798711..2799181 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934760.1 | Uniprot ID | A0AAN2D761 |
| Organism | Staphylococcus aureus strain KUH140013 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2784074..2804350 | 2798711..2799181 | within | 0 |
Gene organization within MGE regions
Location: 2784074..2804350
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6Y13_RS14085 (KUH140013_2605) | lukH | 2784074..2785129 (+) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| F6Y13_RS14090 (KUH140013_2606) | lukG | 2785151..2786167 (+) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| F6Y13_RS14095 (KUH140013_2607) | sph | 2786405..2787229 (-) | 825 | Protein_2673 | sphingomyelin phosphodiesterase | - |
| F6Y13_RS14100 (KUH140013_2608) | - | 2787286..2788323 (-) | 1038 | WP_000857191.1 | tyrosine-type recombinase/integrase | - |
| F6Y13_RS14105 (KUH140013_2609) | - | 2788382..2788846 (-) | 465 | WP_000825947.1 | hypothetical protein | - |
| F6Y13_RS14110 (KUH140013_2610) | - | 2788946..2789128 (-) | 183 | WP_000705248.1 | hypothetical protein | - |
| F6Y13_RS14115 (KUH140013_2611) | - | 2789332..2789673 (-) | 342 | WP_000591750.1 | hypothetical protein | - |
| F6Y13_RS14120 (KUH140013_2612) | - | 2789679..2790611 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| F6Y13_RS14125 (KUH140013_2613) | - | 2790627..2791340 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| F6Y13_RS14130 | - | 2791303..2791476 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| F6Y13_RS14135 (KUH140013_2614) | - | 2791473..2791736 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| F6Y13_RS14140 (KUH140013_2615) | - | 2791752..2791967 (+) | 216 | WP_001025404.1 | Thoeris anti-defense Tad2 family protein | - |
| F6Y13_RS14145 (KUH140013_2616) | - | 2791956..2792285 (-) | 330 | WP_000128907.1 | hypothetical protein | - |
| F6Y13_RS14150 (KUH140013_2617) | - | 2792336..2793088 (+) | 753 | WP_001148605.1 | phage antirepressor KilAC domain-containing protein | - |
| F6Y13_RS14155 (KUH140013_2618) | - | 2793104..2793301 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| F6Y13_RS14160 (KUH140013_2619) | - | 2793288..2793668 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| F6Y13_RS14165 (KUH140013_2620) | - | 2793723..2794046 (+) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| F6Y13_RS14170 (KUH140013_2621) | - | 2794043..2794204 (+) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| F6Y13_RS14175 (KUH140013_2622) | - | 2794299..2794601 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| F6Y13_RS14180 (KUH140013_2623) | - | 2794606..2794866 (+) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| F6Y13_RS14185 (KUH140013_2624) | - | 2794875..2795138 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| F6Y13_RS14190 (KUH140013_2625) | - | 2795147..2797090 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| F6Y13_RS14195 (KUH140013_2626) | - | 2797092..2798012 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| F6Y13_RS14200 (KUH140013_2627) | - | 2798093..2798710 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| F6Y13_RS14205 (KUH140013_2628) | ssbA | 2798711..2799181 (+) | 471 | WP_000934760.1 | single-stranded DNA-binding protein | Machinery gene |
| F6Y13_RS14210 (KUH140013_2629) | - | 2799211..2800104 (+) | 894 | WP_000148321.1 | DnaD domain protein | - |
| F6Y13_RS14215 (KUH140013_2630) | - | 2800111..2800329 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| F6Y13_RS14220 (KUH140013_2631) | - | 2800338..2800742 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F6Y13_RS14225 (KUH140013_2632) | - | 2800755..2801123 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| F6Y13_RS14230 (KUH140013_2633) | - | 2801127..2801369 (+) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| F6Y13_RS14235 (KUH140013_2634) | - | 2801384..2801632 (+) | 249 | WP_001065094.1 | DUF1024 family protein | - |
| F6Y13_RS14240 (KUH140013_2635) | - | 2801625..2802161 (+) | 537 | WP_001066447.1 | dUTP diphosphatase | - |
| F6Y13_RS14245 (KUH140013_2636) | - | 2802198..2802443 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| F6Y13_RS14250 (KUH140013_2637) | - | 2802440..2802646 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| F6Y13_RS14255 (KUH140013_2638) | - | 2802643..2803029 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| F6Y13_RS14260 (KUH140013_2639) | rinB | 2803026..2803175 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| F6Y13_RS14265 (KUH140013_2640) | - | 2803175..2803375 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| F6Y13_RS14270 (KUH140013_2641) | - | 2803403..2803819 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| F6Y13_RS14275 (KUH140013_2642) | - | 2804051..2804350 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=74611 F6Y13_RS14205 WP_000934760.1 2798711..2799181(+) (ssbA) [Staphylococcus aureus strain KUH140013]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=74611 F6Y13_RS14205 WP_000934760.1 2798711..2799181(+) (ssbA) [Staphylococcus aureus strain KUH140013]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |
| ssb | Neisseria meningitidis MC58 |
32.948 |
100 |
0.365 |
| ssb | Neisseria gonorrhoeae MS11 |
32.948 |
100 |
0.365 |