Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   K6K00_RS02335 Genome accession   NZ_AP024628
Coordinates   466554..466988 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain BEST3145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461554..471988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K00_RS02305 (BsBEST3145_04340) ydaD 462204..463064 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  K6K00_RS02310 (BsBEST3145_04350) lyxE 463080..463583 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  K6K00_RS02315 (BsBEST3145_04360) ydaF 463669..464220 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  K6K00_RS02320 (BsBEST3145_04370) ydaG 464298..464720 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  K6K00_RS02325 (BsBEST3145_04380) amj 465226..466035 (+) 810 WP_003234394.1 lipid II flippase Amj -
  K6K00_RS02330 (BsBEST3145_04390) ydzA 466079..466369 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  K6K00_RS02335 (BsBEST3145_04400) lrpC 466554..466988 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  K6K00_RS02340 (BsBEST3145_04410) topB 467053..469236 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  K6K00_RS02345 (BsBEST3145_04420) ephJ 469439..470527 (+) 1089 WP_003246551.1 lipoprotein -
  K6K00_RS02350 (BsBEST3145_04430) epsK 470508..471359 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=74596 K6K00_RS02335 WP_003246585.1 466554..466988(+) (lrpC) [Bacillus subtilis strain BEST3145]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=74596 K6K00_RS02335 WP_003246585.1 466554..466988(+) (lrpC) [Bacillus subtilis strain BEST3145]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1