Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QAO35_RS04280 Genome accession   NZ_CP123074
Coordinates   907632..908714 (+) Length   360 a.a.
NCBI ID   WP_015445768.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MRSA61     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 902632..913714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO35_RS04260 (QAO35_04270) gdpS 903009..904079 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  QAO35_RS04265 (QAO35_04275) - 904397..905452 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  QAO35_RS04270 (QAO35_04280) - 905617..906258 (-) 642 WP_000192949.1 YigZ family protein -
  QAO35_RS04275 (QAO35_04285) fakB1 906402..907268 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  QAO35_RS04280 (QAO35_04290) comFA 907632..908714 (+) 1083 WP_015445768.1 DEAD/DEAH box helicase Machinery gene
  QAO35_RS04285 (QAO35_04295) - 908707..909381 (+) 675 WP_001057965.1 ComF family protein -
  QAO35_RS04290 (QAO35_04300) hpf 909442..910014 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  QAO35_RS04295 (QAO35_04305) secA 910428..912959 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  QAO35_RS04300 (QAO35_04310) - 913001..913105 (+) 105 WP_001790092.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42035.50 Da        Isoelectric Point: 9.6864

>NTDB_id=745640 QAO35_RS04280 WP_015445768.1 907632..908714(+) (comFA) [Staphylococcus aureus strain SW-MRSA61]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRMKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=745640 QAO35_RS04280 WP_015445768.1 907632..908714(+) (comFA) [Staphylococcus aureus strain SW-MRSA61]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATGAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTACATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTGCTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367