Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QAY76_RS02495 Genome accession   NZ_CP123072
Coordinates   462330..464009 (+) Length   559 a.a.
NCBI ID   WP_411893012.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457330..469009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY76_RS02465 (QAY76_02455) - 458183..458545 (+) 363 WP_001837952.1 Asp23/Gls24 family envelope stress response protein -
  QAY76_RS02470 (QAY76_02460) nusB 458605..458994 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  QAY76_RS02475 (QAY76_02465) xseA 459011..460348 (+) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  QAY76_RS02480 (QAY76_02470) - 460341..460571 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  QAY76_RS02485 (QAY76_02475) - 460549..461430 (+) 882 WP_000183375.1 polyprenyl synthetase family protein -
  QAY76_RS02490 (QAY76_02480) ahrC 461862..462314 (+) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  QAY76_RS02495 (QAY76_02485) recN 462330..464009 (+) 1680 WP_411893012.1 DNA repair protein RecN Machinery gene
  QAY76_RS02500 (QAY76_02490) lpdA 464160..465581 (+) 1422 WP_047928467.1 dihydrolipoyl dehydrogenase -
  QAY76_RS02505 (QAY76_02495) - 465597..466589 (+) 993 WP_000568352.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  QAY76_RS02510 (QAY76_02500) - 466589..467572 (+) 984 WP_047928466.1 alpha-ketoacid dehydrogenase subunit beta -
  QAY76_RS02515 (QAY76_02505) - 467585..468859 (+) 1275 WP_000406859.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64239.81 Da        Isoelectric Point: 4.7634

>NTDB_id=745563 QAY76_RS02495 WP_411893012.1 462330..464009(+) (recN) [Staphylococcus aureus strain SW-MSSA62]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEHIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=745563 QAY76_RS02495 WP_411893012.1 462330..464009(+) (recN) [Staphylococcus aureus strain SW-MSSA62]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATAGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGCATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAACATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAGTCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44