Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QAO32_RS09840 Genome accession   NZ_CP123070
Coordinates   1958942..1959319 (-) Length   125 a.a.
NCBI ID   WP_411905280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MSSA64     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953942..1964319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO32_RS09815 (QAO32_09810) - 1954322..1955308 (+) 987 WP_411905279.1 tRNA dihydrouridine synthase -
  QAO32_RS09820 (QAO32_09815) - 1955369..1955941 (-) 573 WP_000540837.1 TetR/AcrR family transcriptional regulator -
  QAO32_RS09825 (QAO32_09820) - 1956089..1957606 (+) 1518 WP_000107171.1 MDR family MFS transporter -
  QAO32_RS09830 (QAO32_09825) - 1957608..1958165 (+) 558 WP_000633423.1 DUF4811 domain-containing protein -
  QAO32_RS09835 (QAO32_09830) - 1958407..1958880 (-) 474 WP_000455984.1 GNAT family N-acetyltransferase -
  QAO32_RS09840 (QAO32_09835) lrpC 1958942..1959319 (-) 378 WP_411905280.1 Lrp/AsnC family transcriptional regulator Machinery gene
  QAO32_RS09850 (QAO32_09845) - 1960962..1962758 (-) 1797 WP_411905281.1 restriction endonuclease subunit M -
  QAO32_RS09855 (QAO32_09850) rlmH 1962949..1963428 (-) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14604.71 Da        Isoelectric Point: 4.6399

>NTDB_id=745519 QAO32_RS09840 WP_411905280.1 1958942..1959319(-) (lrpC) [Staphylococcus aureus strain SW-MSSA64]
MLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNDRYKDFKEFISKQDNVEF
CYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQIKCQFIFSSVV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=745519 QAO32_RS09840 WP_411905280.1 1958942..1959319(-) (lrpC) [Staphylococcus aureus strain SW-MSSA64]
TTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACAAGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGT
AAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTAACATAGATTATAAGGAATTAGGTTACGATGTAGAAA
TATTAATTGAGTTAACTATAAAGAATGATAGATACAAAGATTTTAAAGAATTTATTTCAAAACAAGATAATGTTGAGTTT
TGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCGGTTGGAAAATATGGATGAAGTAGAAACATTTGTTGA
TACCATACAGCCATATGGGCAGATAAAATGTCAGTTTATCTTTTCATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-37)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(56-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

42.975

96.8

0.416