Detailed information NTG0745293

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QDU34_RS05300
• Genome accession: NZ_CP123046
• Coordinates: 1086718..1087710 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC0430
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1081718..1092710

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QDU34_RS05270 (QDU34_05270)	ispD	1081779..1082489 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QDU34_RS05275 (QDU34_05275)	ispF	1082489..1082968 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QDU34_RS05280 (QDU34_05280)	truD	1082965..1084014 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
QDU34_RS05285 (QDU34_05285)	surE	1083995..1084756 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
QDU34_RS05290 (QDU34_05290)	pcm	1084750..1085376 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QDU34_RS05295 (QDU34_05295)	nlpD	1085561..1086655 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QDU34_RS05300 (QDU34_05300)	rpoS	1086718..1087710 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QDU34_RS05305 (QDU34_05305)	-	1087831..1088238 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
QDU34_RS05310 (QDU34_05310)	-	1088385..1088978 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QDU34_RS05315 (QDU34_05315)	-	1088978..1090405 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QDU34_RS05320 (QDU34_05320)	-	1090416..1090652 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QDU34_RS05325 (QDU34_05325)	ygbN	1090691..1092055 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=745293 QDU34_RS05300 WP_000081550.1 1086718..1087710(+) (rpoS) [Escherichia coli strain EC0430]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=745293 QDU34_RS05300 WP_000081550.1 1086718..1087710(+) (rpoS) [Escherichia coli strain EC0430]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715