Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QEN53_RS17415 Genome accession   NZ_CP123024
Coordinates   3580945..3581550 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 20-16     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3575945..3586550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN53_RS17395 aes 3575982..3576941 (+) 960 WP_000801846.1 acetyl esterase -
  QEN53_RS17400 hemH 3576938..3577900 (-) 963 WP_001250088.1 ferrochelatase -
  QEN53_RS17405 adk 3578136..3578780 (-) 645 WP_001220233.1 adenylate kinase -
  QEN53_RS17410 htpG 3578961..3580835 (-) 1875 WP_000678213.1 molecular chaperone HtpG -
  QEN53_RS17415 recR 3580945..3581550 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QEN53_RS17420 ybaB 3581550..3581879 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QEN53_RS17425 dnaX 3581932..3583863 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QEN53_RS17430 apt 3583992..3584543 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QEN53_RS17435 ybaN 3584696..3585073 (-) 378 WP_001188905.1 DUF454 family protein -
  QEN53_RS17440 priC 3585143..3585670 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QEN53_RS17445 rsmS 3585684..3585845 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QEN53_RS17450 - 3585898..3585996 (-) 99 Protein_3422 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=745083 QEN53_RS17415 WP_001195025.1 3580945..3581550(-) (recR) [Escherichia coli strain 20-16]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=745083 QEN53_RS17415 WP_001195025.1 3580945..3581550(-) (recR) [Escherichia coli strain 20-16]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443