Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEN53_RS14775 Genome accession   NZ_CP123024
Coordinates   3036019..3036648 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 20-16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3031019..3041648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN53_RS14760 helD 3031261..3033315 (-) 2055 WP_000420536.1 DNA helicase IV -
  QEN53_RS14765 yccF 3033438..3033884 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEN53_RS14770 yccS 3033894..3036056 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QEN53_RS14775 sxy/tfoX 3036019..3036648 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEN53_RS14780 sulA 3036867..3037376 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEN53_RS14785 ompA 3037733..3038785 (+) 1053 WP_001361736.1 porin OmpA -
  QEN53_RS14790 matP 3038861..3039313 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QEN53_RS14795 ycbZ 3039499..3041259 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=745076 QEN53_RS14775 WP_000839153.1 3036019..3036648(-) (sxy/tfoX) [Escherichia coli strain 20-16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=745076 QEN53_RS14775 WP_000839153.1 3036019..3036648(-) (sxy/tfoX) [Escherichia coli strain 20-16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1