Detailed information NTG0745049

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEN53_RS05315
• Genome accession: NZ_CP123024
• Coordinates: 1085730..1086722 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 20-16
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1080730..1091722

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEN53_RS05285	ispD	1080791..1081501 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QEN53_RS05290	ispF	1081501..1081980 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEN53_RS05295	truD	1081977..1083026 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QEN53_RS05300	surE	1083007..1083768 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
QEN53_RS05305	pcm	1083762..1084388 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QEN53_RS05310	nlpD	1084573..1085667 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QEN53_RS05315	rpoS	1085730..1086722 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEN53_RS05320	ygbN	1086816..1088180 (-)	1365	WP_000104456.1	GntP family transporter	-
QEN53_RS05325	ygbM	1088269..1089045 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QEN53_RS05330	ygbL	1089050..1089688 (-)	639	WP_001278994.1	aldolase	-
QEN53_RS05335	otnK	1089685..1090947 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=745049 QEN53_RS05315 WP_000081550.1 1085730..1086722(+) (rpoS) [Escherichia coli strain 20-16]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=745049 QEN53_RS05315 WP_000081550.1 1085730..1086722(+) (rpoS) [Escherichia coli strain 20-16]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715