Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEN55_RS14815 Genome accession   NZ_CP123017
Coordinates   3044085..3044714 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 19-7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039085..3049714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN55_RS14800 helD 3039327..3041381 (-) 2055 WP_000420536.1 DNA helicase IV -
  QEN55_RS14805 yccF 3041504..3041950 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEN55_RS14810 yccS 3041960..3044122 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QEN55_RS14815 sxy/tfoX 3044085..3044714 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEN55_RS14820 sulA 3044933..3045442 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEN55_RS14825 ompA 3045799..3046851 (+) 1053 WP_001361736.1 porin OmpA -
  QEN55_RS14830 matP 3046927..3047379 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QEN55_RS14835 ycbZ 3047565..3049325 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=744994 QEN55_RS14815 WP_000839153.1 3044085..3044714(-) (sxy/tfoX) [Escherichia coli strain 19-7]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=744994 QEN55_RS14815 WP_000839153.1 3044085..3044714(-) (sxy/tfoX) [Escherichia coli strain 19-7]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1