Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QEN55_RS05335 Genome accession   NZ_CP123017
Coordinates   1088318..1089310 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 19-7     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083318..1094310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN55_RS05305 ispD 1083379..1084089 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QEN55_RS05310 ispF 1084089..1084568 (+) 480 WP_001374730.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QEN55_RS05315 truD 1084565..1085614 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  QEN55_RS05320 surE 1085595..1086356 (+) 762 WP_001374723.1 5'/3'-nucleotidase SurE -
  QEN55_RS05325 pcm 1086350..1086976 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  QEN55_RS05330 nlpD 1087161..1088255 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  QEN55_RS05335 rpoS 1088318..1089310 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  QEN55_RS05340 ygbN 1089404..1090768 (-) 1365 WP_000104456.1 GntP family transporter -
  QEN55_RS05345 ygbM 1090857..1091633 (-) 777 WP_001136918.1 HPr family phosphocarrier protein -
  QEN55_RS05350 ygbL 1091638..1092276 (-) 639 WP_001278994.1 aldolase -
  QEN55_RS05355 otnK 1092273..1093535 (-) 1263 WP_000590392.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=744967 QEN55_RS05335 WP_000081550.1 1088318..1089310(+) (rpoS) [Escherichia coli strain 19-7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=744967 QEN55_RS05335 WP_000081550.1 1088318..1089310(+) (rpoS) [Escherichia coli strain 19-7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715