Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEN56_RS14795 Genome accession   NZ_CP123013
Coordinates   3039501..3040130 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 18-4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034501..3045130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN56_RS14780 helD 3034743..3036797 (-) 2055 WP_000420536.1 DNA helicase IV -
  QEN56_RS14785 yccF 3036920..3037366 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEN56_RS14790 yccS 3037376..3039538 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QEN56_RS14795 sxy/tfoX 3039501..3040130 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEN56_RS14800 sulA 3040349..3040858 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEN56_RS14805 ompA 3041215..3042267 (+) 1053 WP_001361736.1 porin OmpA -
  QEN56_RS14810 matP 3042343..3042795 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QEN56_RS14815 ycbZ 3042981..3044741 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=744912 QEN56_RS14795 WP_000839153.1 3039501..3040130(-) (sxy/tfoX) [Escherichia coli strain 18-4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=744912 QEN56_RS14795 WP_000839153.1 3039501..3040130(-) (sxy/tfoX) [Escherichia coli strain 18-4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1