Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   QEN56_RS05310 Genome accession   NZ_CP123013
Coordinates   1085730..1086722 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 18-4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080730..1091722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN56_RS05280 ispD 1080791..1081501 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QEN56_RS05285 ispF 1081501..1081980 (+) 480 WP_001374730.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QEN56_RS05290 truD 1081977..1083026 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  QEN56_RS05295 surE 1083007..1083768 (+) 762 WP_001374723.1 5'/3'-nucleotidase SurE -
  QEN56_RS05300 pcm 1083762..1084388 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  QEN56_RS05305 nlpD 1084573..1085667 (+) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  QEN56_RS05310 rpoS 1085730..1086722 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  QEN56_RS05315 ygbN 1086816..1088180 (-) 1365 WP_000104456.1 GntP family transporter -
  QEN56_RS05320 ygbM 1088269..1089045 (-) 777 WP_001136918.1 HPr family phosphocarrier protein -
  QEN56_RS05325 ygbL 1089050..1089688 (-) 639 WP_001278994.1 aldolase -
  QEN56_RS05330 otnK 1089685..1090947 (-) 1263 WP_000590392.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=744885 QEN56_RS05310 WP_000081550.1 1085730..1086722(+) (rpoS) [Escherichia coli strain 18-4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=744885 QEN56_RS05310 WP_000081550.1 1085730..1086722(+) (rpoS) [Escherichia coli strain 18-4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715