Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QEN28_RS07720 Genome accession   NZ_CP123009
Coordinates   1554439..1555044 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O155 strain NWU_3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549439..1560044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN28_RS07700 (QEN28_07700) aes 1549476..1550435 (+) 960 WP_000801832.1 acetyl esterase -
  QEN28_RS07705 (QEN28_07705) hemH 1550432..1551394 (-) 963 WP_001250088.1 ferrochelatase -
  QEN28_RS07710 (QEN28_07710) adk 1551630..1552274 (-) 645 WP_001220233.1 adenylate kinase -
  QEN28_RS07715 (QEN28_07715) htpG 1552455..1554329 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  QEN28_RS07720 (QEN28_07720) recR 1554439..1555044 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QEN28_RS07725 (QEN28_07725) ybaB 1555044..1555373 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QEN28_RS07730 (QEN28_07730) dnaX 1555426..1557357 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  QEN28_RS07735 (QEN28_07735) apt 1557486..1558037 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QEN28_RS07740 (QEN28_07740) ybaN 1558190..1558567 (-) 378 WP_001188905.1 DUF454 family protein -
  QEN28_RS07745 (QEN28_07745) priC 1558637..1559164 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QEN28_RS07750 (QEN28_07750) rsmS 1559178..1559339 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  QEN28_RS07755 (QEN28_07755) - 1559392..1559490 (-) 99 Protein_1526 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=744802 QEN28_RS07720 WP_001195025.1 1554439..1555044(-) (recR) [Escherichia coli O155 strain NWU_3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=744802 QEN28_RS07720 WP_001195025.1 1554439..1555044(-) (recR) [Escherichia coli O155 strain NWU_3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443