Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEN27_RS10635 Genome accession   NZ_CP123008
Coordinates   2165889..2166518 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain NWU_4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2160889..2171518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN27_RS10620 (QEN27_10620) helD 2161131..2163185 (-) 2055 WP_001315388.1 DNA helicase IV -
  QEN27_RS10625 (QEN27_10625) yccF 2163308..2163754 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEN27_RS10630 (QEN27_10630) yccS 2163764..2165926 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QEN27_RS10635 (QEN27_10635) sxy/tfoX 2165889..2166518 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEN27_RS10640 (QEN27_10640) sulA 2166737..2167246 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEN27_RS10645 (QEN27_10645) ompA 2167603..2168655 (+) 1053 WP_000750419.1 porin OmpA -
  QEN27_RS10650 (QEN27_10650) matP 2168730..2169182 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QEN27_RS10655 (QEN27_10655) ycbZ 2169368..2171128 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=744733 QEN27_RS10635 WP_000839153.1 2165889..2166518(-) (sxy/tfoX) [Escherichia coli strain NWU_4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=744733 QEN27_RS10635 WP_000839153.1 2165889..2166518(-) (sxy/tfoX) [Escherichia coli strain NWU_4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1