Detailed information NTG0744732

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QEN27_RS09350
• Genome accession: NZ_CP123008
• Coordinates: 1892841..1893833 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NWU_4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1887841..1898833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QEN27_RS09325 (QEN27_09325)	ygbN	1888496..1889860 (+)	1365	WP_000104439.1	GntP family transporter	-
QEN27_RS09330 (QEN27_09330)	-	1889899..1890135 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
QEN27_RS09335 (QEN27_09335)	-	1890146..1891573 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
QEN27_RS09340 (QEN27_09340)	-	1891573..1892166 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
QEN27_RS09345 (QEN27_09345)	-	1892313..1892720 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
QEN27_RS09350 (QEN27_09350)	rpoS	1892841..1893833 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QEN27_RS09355 (QEN27_09355)	nlpD	1893896..1894990 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QEN27_RS09360 (QEN27_09360)	pcm	1895175..1895801 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QEN27_RS09365 (QEN27_09365)	surE	1895795..1896556 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QEN27_RS09370 (QEN27_09370)	truD	1896537..1897586 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QEN27_RS09375 (QEN27_09375)	ispF	1897583..1898062 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QEN27_RS09380 (QEN27_09380)	ispD	1898062..1898772 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=744732 QEN27_RS09350 WP_000081550.1 1892841..1893833(-) (rpoS) [Escherichia coli strain NWU_4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=744732 QEN27_RS09350 WP_000081550.1 1892841..1893833(-) (rpoS) [Escherichia coli strain NWU_4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715