Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   CFBP5506_RS12140 Genome accession   NZ_CP122962
Coordinates   2530385..2532193 (+) Length   602 a.a.
NCBI ID   WP_080792021.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2525385..2537193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS12140 (CFBP5506_12140) recQ 2530385..2532193 (+) 1809 WP_080792021.1 DNA helicase RecQ Machinery gene
  CFBP5506_RS12145 (CFBP5506_12145) - 2532250..2533482 (-) 1233 WP_080792018.1 ROK family transcriptional regulator -
  CFBP5506_RS12150 (CFBP5506_12150) - 2533747..2534769 (+) 1023 WP_077983295.1 sugar ABC transporter substrate-binding protein -
  CFBP5506_RS12155 (CFBP5506_12155) - 2534997..2536079 (+) 1083 WP_080792015.1 ABC transporter permease -
  CFBP5506_RS12160 (CFBP5506_12160) - 2536079..2536861 (+) 783 WP_080792013.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67004.65 Da        Isoelectric Point: 6.4000

>NTDB_id=744705 CFBP5506_RS12140 WP_080792021.1 2530385..2532193(+) (recQ) [Agrobacterium tumefaciens strain CFBP5506]
MTADPLHILKTVYGYDAFRGRQADIIGHVMAGNNAFVLMPTGGGKSICYQIPALARNGMGLIVSPLIALMVDQVAALRQA
GVRAEALNSDLSPEERRALWRDMRAGKVDILYAAPETLLKPDVLDALQSIALSLIAVDEAHCLSQWGHDFRPPYRQLDAL
IERFPDTPRMALTATADEPTRAEILGHLGIEEHDAFIAGFDRPNIRYAIMEKDNPRAQLKRFLKDRDGESGIVYCLSKRK
VDETAAWLREEGRDALSYHAGMDKAAREENQSRFQHGEAVIIVATVAFGMGIDKPDVRFVVHVDLPGSIEAYYQETGRAG
RDGLPSDVLMLYGYEDIALRNRFIEESDAADQRKYMERQKLDALLGLAETASCRRQVLLSYFGDRCEPCGNCDTCAEPPD
LFDGAIAAQKLLSCIYRTGERFGQAYVIRVLLGVEDERISRFGHDRITTYGIGKEHDNRTWRAILRQLVALRMIEVDLSG
HGGLSISEDGRRFLREKPALMLRIPSAPRSARQQTPRNTVSTVLPESDRSLFEALRAKRMEIARAQNVPPYVIFHDKTLM
ELAAIKPASAKEMAEIPGVGDTKLERYGPAFLAAIMQHAAGE

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=744705 CFBP5506_RS12140 WP_080792021.1 2530385..2532193(+) (recQ) [Agrobacterium tumefaciens strain CFBP5506]
GTGACCGCCGATCCCTTGCATATTCTCAAGACCGTCTATGGCTACGATGCGTTTCGCGGAAGGCAGGCCGACATCATTGG
GCATGTAATGGCGGGAAACAATGCTTTCGTTTTGATGCCGACCGGCGGCGGAAAGTCCATTTGTTACCAGATTCCGGCGC
TTGCTCGCAATGGCATGGGGTTGATCGTTTCGCCGCTTATCGCGCTGATGGTCGATCAGGTCGCTGCCCTGCGTCAGGCC
GGCGTGCGGGCCGAAGCTCTCAATTCCGATCTTTCCCCGGAAGAGCGGCGCGCGCTCTGGCGGGACATGCGGGCCGGCAA
GGTCGATATTCTTTATGCCGCGCCGGAAACCCTGCTCAAGCCGGATGTCCTCGATGCGTTGCAATCCATTGCCCTGTCGC
TGATCGCCGTCGATGAGGCTCATTGCCTTTCGCAATGGGGGCATGATTTCCGACCGCCCTACCGCCAGCTCGACGCGCTG
ATTGAGCGTTTTCCCGATACGCCGCGCATGGCGTTGACGGCGACGGCCGACGAGCCGACGCGCGCCGAAATTCTCGGTCA
CCTGGGGATTGAAGAACATGATGCCTTCATTGCCGGGTTCGACCGACCCAATATCCGCTATGCGATCATGGAAAAGGACA
ATCCGCGCGCGCAGCTGAAGCGCTTTTTGAAGGATCGCGACGGTGAGAGCGGTATCGTCTATTGCCTTTCCAAACGCAAG
GTGGACGAAACGGCGGCATGGCTGCGGGAGGAGGGGCGCGATGCGTTGTCCTATCACGCCGGCATGGACAAGGCCGCCCG
TGAGGAAAACCAGAGCCGTTTCCAGCACGGCGAGGCGGTCATCATTGTCGCGACCGTTGCTTTCGGCATGGGTATAGACA
AGCCGGATGTGCGCTTCGTGGTGCATGTCGACCTGCCCGGCAGTATCGAGGCCTATTATCAGGAAACAGGCCGAGCCGGT
CGTGATGGTTTGCCGTCGGACGTGCTCATGCTCTATGGCTATGAAGATATTGCCCTGCGCAATCGTTTCATCGAAGAATC
TGATGCCGCGGACCAGCGCAAATATATGGAGCGCCAGAAGCTCGATGCGCTGCTCGGCCTCGCAGAAACGGCCAGTTGCC
GCCGGCAGGTTCTGCTCTCCTATTTCGGCGACCGGTGCGAGCCCTGCGGCAATTGCGATACCTGCGCCGAGCCGCCGGAC
CTGTTTGACGGGGCCATCGCCGCGCAGAAACTTCTGTCCTGTATTTATCGCACGGGTGAACGTTTTGGCCAGGCCTATGT
CATCCGCGTATTGCTGGGTGTCGAGGACGAGCGGATTTCCCGCTTCGGCCATGACCGCATTACCACCTACGGGATAGGGA
AGGAGCACGACAACCGCACATGGCGCGCCATCCTGCGTCAGCTGGTTGCGTTACGTATGATTGAAGTGGATCTGTCCGGA
CATGGCGGCCTGTCCATCTCCGAGGATGGACGGCGGTTCCTGCGCGAAAAACCGGCATTGATGCTGAGGATACCATCCGC
TCCCCGTTCCGCACGGCAGCAGACGCCGCGCAACACGGTATCGACGGTCTTGCCGGAATCCGATCGCAGCCTTTTTGAGG
CGCTGCGTGCCAAGCGTATGGAGATCGCCCGGGCACAGAACGTTCCACCCTATGTGATTTTCCACGACAAGACCCTCATG
GAACTCGCGGCGATAAAACCGGCCTCGGCGAAGGAAATGGCTGAGATTCCCGGCGTCGGGGACACCAAGCTGGAGCGATA
CGGGCCTGCCTTTCTGGCGGCGATCATGCAGCACGCCGCTGGCGAGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-177)

RQC domain (RQC)

(398-509)

RecQ zinc-binding (RecQ_Zn_bind)

(334-396)

Helicase conserved C-terminal domain (Helicase_C)

(218-322)

HRDC domain (HRDC)

(530-595)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

37.248

99.003

0.369